SCN Proteipedia

Hg_chrom5_TN10mRNA_10412

Organism: Heterodera glycines Gene Locus: chr5:7014330-7021357 Feature type: polypeptide

Protein Sequence

Length: 729

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.877	1.372	0.873	1.892	1.097	1.442	0.8	1.235	1.036	0.797	1.185	0.968	1.219	0.791	1.344	0.96	0.72	0.748	0.739	0.807	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9799	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.619

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	GLKAFKKARDEARKK,KKIGHEGLKAFKKARD,KRNSDDQQKYQQQKMKHK,RKFYEEKKIGHEGLKAFKK	—	—	—	—	—	—	0.000	—	—	0.856	0.161	0.007	0.343	0.038	0.026	0.013	0.005	0.064	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009886	1.000	1.000	Hsc_gene_18229.t1	Hsc_gene_18229.t1	—	Q4V863.1 Histone-lysine N-methyltransferase EZH2 [Xenopus laevis]	KAI3414063.1 Histone-lysine N-methyltransferase ezh2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006338\|GO:0042054	GO:0008150_0.929\|GO:0009987_0.858\|GO:0005575_0.854\|GO:0110165_0.854\|GO:0003674_0.830\|GO:0065007_0.771\|GO:0050789_0.762\|GO:0005622_0.761\|GO:0050794_0.729\|GO:0016020_0.716\|GO:0032502_0.715\|GO:0048856_0.705\|GO:0043226_0.699\|GO:0043229_0.685\|GO:0008152_0.684\|GO:0043170_0.684\|GO:0071840_0.682\|GO:0032501_0.673\|GO:0016043_0.672\|GO:0044237_0.647\|GO:0043227_0.640\|GO:0009058_0.635\|GO:0019222_0.635\|GO:0031323_0.634\|GO:0009059_0.630\|GO:0044249_0.630\|GO:0010467_0.628\|GO:0005488_0.627\|GO:0060255_0.623\|GO:0043231_0.622\|GO:0009889_0.611\|GO:0031326_0.607\|GO:0005634_0.604\|GO:0003824_0.603\|GO:0010556_0.601\|GO:0010468_0.599\|GO:0006325_0.592\|GO:0006338_0.590\|GO:0140096_0.586\|GO:0016740_0.568\|GO:0007275_0.553\|GO:0048519_0.552\|GO:0140993_0.536\|GO:0008168_0.533\|GO:0008757_0.533\|GO:0016741_0.533\|GO:0044238_0.533\|GO:0048523_0.532\|GO:0008170_0.530\|GO:0008276_0.530\|GO:0016278_0.530\|GO:0016279_0.530\|GO:0042054_0.530\|GO:0050896_0.530\|GO:0140938_0.530\|GO:0048731_0.523	IPR001214+561-676_561-682_572-676+\|IPR026489+451-554+\|IPR033467+503-541+\|IPR041355+507-539+\|IPR045318+8-677+\|IPR046341+469-676_470-681+	SM00317+561-682+\|SM01114+503-541+	PF00856+572-676+SET_domain\|PF18264+507-539+CXC_domain	G3DSA:2.170.270.10:FF:000001+469-678+Putative_histone-lysine_N-methyltransferase_EZH2	PTHR45747+8-677+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-20;328-381	2.000	21-327;382-729	4mi5_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.877	82054.090	8.519	31.000	28.258	10.562	50.892	49.108	16.872	11.385	50.617

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1328.506	3291.814	1642.612	1409.114	1350.174	1097.040	1264.077	851.115	838.205	1093.828	984.275

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.233	-1.361	-0.112	—	-0.285	0.215	-0.474	0.714	—	—	—	—	—

No JSON data available for plots.

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