Hg_chrom5_TN10mRNA_10415
Organism: Heterodera glycines Gene Locus: chr5:7032048-7041576 Feature type: polypeptideProtein Sequence
Length: 1,594
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.919 | 0.913 | 0.909 | 1.108 | 1.174 | 0.799 | 1.317 | 0.627 | 1.238 | 0.39 | 1.439 | 1.028 | 1.243 | 1.357 | 1.308 | 1.09 | 0.951 | 0.386 | 0.369 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9802
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus|chloroplast
|
RRPLADPETGQRRERV
|
— | — |
5-40
|
0.965
|
1-25
|
0.900
|
0.541
|
1.000
|
1.000
|
0.147
|
0.018
|
0.015
|
0.324
|
0.150
|
0.171
|
0.398
|
0.064
|
0.726
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009888
|
1.000
|
1.000
|
Hsc_gene_18239.t1
|
Hsc_gene_18238.t1;Hsc_gene_18238.t2;Hsc_gene_18239.t1
|
— | — |
KAI1713678.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001507+1115-1400+|IPR003609+204-293_319-413_321-403_345-413_420-497_422-496_426-497_535-629_792-893+|IPR052774+557-1404+
|
SM00473+204-293_321-403_422-496_535-629_792-893+
|
PF00024+345-413_426-497+PAN_domain
|
— |
PTHR47327+557-1404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
47-219;634-740;932-1100;1226-1285
|
5.000
|
1-46;220-633;741-931;1101-1225;1286-1594
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
172488.950
|
5.750
|
-18.000
|
23.526
|
8.093
|
47.867
|
52.133
|
11.857
|
11.669
|
57.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
magenta
|
100.795
|
68.813
|
87.565
|
66.005
|
54.601
|
84.680
|
120.632
|
49.955
|
15.540
|
229.730
|
137.934
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.297
|
— |
0.647
|
0.519
|
-0.868
|
1.414
|
— | — | — | — | — |