SCN Proteipedia

Hg_chrom5_TN10mRNA_10417

Organism: Heterodera glycines Gene Locus: chr5:7051141-7059245 Feature type: polypeptide

Protein Sequence

Length: 882

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.949	1.028	1.01	0.977	1.039	1.541	0.702	2.438	0.731	1.18	0.447	1.401	0.976	1.134	1.365	1.247	1.041	0.79	0.349	0.534	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9804	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KPPRGRRR	40-67	0.953	15-44	0.999	—	—	0.000	—	—	0.860	0.134	0.019	0.412	0.040	0.067	0.040	0.023	0.063	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009890	1.000	1.000	Hsc_gene_18241.t3	Hsc_gene_18241.t1;Hsc_gene_18241.t2;Hsc_gene_18241.t3	—	Q18192.2 Nuclear hormone receptor family member nhr-31 [Caenorhabditis elegans]	KAI1726188.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.882\|GO:0065007_0.737\|GO:0050789_0.732\|GO:0003674_0.730\|GO:0009987_0.722\|GO:0005488_0.720\|GO:0005575_0.711\|GO:0050794_0.705\|GO:0110165_0.689\|GO:0008152_0.626\|GO:0019222_0.626\|GO:0031323_0.626\|GO:0044237_0.626\|GO:0050896_0.626\|GO:0044238_0.619\|GO:0080090_0.619\|GO:0005622_0.618\|GO:0043170_0.617\|GO:0060255_0.617\|GO:0009058_0.607\|GO:0009059_0.607\|GO:0009889_0.607\|GO:0010556_0.607\|GO:0031326_0.607\|GO:0044249_0.607\|GO:0097159_0.604\|GO:0010467_0.602\|GO:0006139_0.590\|GO:0010468_0.590\|GO:0016070_0.590\|GO:0032774_0.590\|GO:0034654_0.590\|GO:0090304_0.590\|GO:0141187_0.590\|GO:0019219_0.586\|GO:0051252_0.586\|GO:0043226_0.584\|GO:0006351_0.579\|GO:0006355_0.578\|GO:2001141_0.578\|GO:0032501_0.569\|GO:0043229_0.568\|GO:0003676_0.562\|GO:0003677_0.548\|GO:0043565_0.548\|GO:0048518_0.533\|GO:0032502_0.532\|GO:0048856_0.532\|GO:0048522_0.521\|GO:0006357_0.515\|GO:0006366_0.515\|GO:0016020_0.511\|GO:0003690_0.509\|GO:1990837_0.509	IPR000536+417-653_441-637_450-624+\|IPR001628+224-295_224-299_226-293_227-243_227-253_243-258_276-284_284-292+\|IPR001723+288-298_475-491_551-566_612-629+\|IPR013088+218-325+\|IPR035500+406-657_417-649+\|IPR049636+227-302+\|IPR052496+207-782+	SM00399+224-295+\|SM00430+450-624+	PF00104+441-637+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+226-293+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+219-324+Nuclear_Hormone_Receptor_family	PTHR47519+207-782+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-177;360-427;714-828	3.000	178-359;428-713;829-882	8hbm_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.648	97752.340	6.595	2.500	26.304	10.658	51.814	48.186	14.512	11.791	53.061

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1015.080	1671.656	1192.147	670.532	640.231	724.136	616.916	1059.616	94.419	1904.446	1128.720

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.717	-1.455	-0.722	—	—	-0.222	0.445	-0.640	-4.471	—	—	—	—

No JSON data available for plots.

Back to Browser