SCN Proteipedia

Hg_chrom5_TN10mRNA_10418

Organism: Heterodera glycines Gene Locus: chr5:7060150-7069906 Feature type: polypeptide

Protein Sequence

Length: 1,038

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.941	1.456	0.946	0.631	0.723	1.309	0.791	1.879	1.135	1.328	0.35	1.53	1.044	1.0	1.416	1.321	0.979	0.671	0.593	0.765	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9805	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.883

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KRRR,RPRR	—	—	24-50	0.984	—	—	0.000	—	—	0.084	0.082	0.005	0.165	0.221	0.325	0.228	0.011	0.786	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002230	1.000	3.000	Hsc_gene_18242.t3;Hsc_gene_18242.t4;Hsc_gene_18242.t5	Hsc_gene_18242.t1;Hsc_gene_18242.t2;Hsc_gene_18242.t3;Hsc_gene_18242.t4;Hsc_gene_18242.t5	—	G5EFJ9.1 Potassium voltage-gated channel unc-103 [Caenorhabditis elegans]	KAI1721547.1 ion transport protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005249\|GO:0006811\|GO:0006813\|GO:0016020\|GO:0055085	GO:0008150_0.941\|GO:0009987_0.842\|GO:0003674_0.814\|GO:0051179_0.780\|GO:0006810_0.770\|GO:0051234_0.770\|GO:0006811_0.657\|GO:0055085_0.648\|GO:0006812_0.628\|GO:0030001_0.623\|GO:0034220_0.621\|GO:0005575_0.619\|GO:0110165_0.619\|GO:0005215_0.607\|GO:0015267_0.607\|GO:0022803_0.607\|GO:0022857_0.607\|GO:0005216_0.601\|GO:0015075_0.601\|GO:0098660_0.599\|GO:0098655_0.597\|GO:0006813_0.591\|GO:0098662_0.585\|GO:0005261_0.582\|GO:0008324_0.582\|GO:0071944_0.582\|GO:0016020_0.577\|GO:0022836_0.577\|GO:0005886_0.571\|GO:0071805_0.570\|GO:0015318_0.569\|GO:0022890_0.562\|GO:0046873_0.562\|GO:0005244_0.550\|GO:0005267_0.550\|GO:0015079_0.550\|GO:0022832_0.550\|GO:0022843_0.547\|GO:0005249_0.540\|GO:0065007_0.525\|GO:0005488_0.506	IPR000595+547-646_547-657_547-665_567-646+\|IPR003938+200-209_218-225_256-266_267-276_362-372_416-433_442-453_460-469_510-517_627-635+\|IPR003967+217-229_489-504_506-517_562-576_603-615+\|IPR005821+207-473+\|IPR014710+514-687+\|IPR018490+474-661+\|IPR050818+166-1008+	SM00100+547-665+	PF00027+567-646+Cyclic_nucleotide-binding_domain\|PF00520+207-473+Ion_transport_protein	G3DSA:1.10.1200.260:FF:000001+469-510+Potassium_voltage-gated_channel_subfamily_H_member_7\|G3DSA:1.10.287.70:FF:000020+205-468+Potassium_channel,_voltage-gated_eag-related_subfamily_H,_member_7\|G3DSA:2.60.120.10:FF:000107+514-677+Potassium_voltage-gated_channel_unc-103	PTHR10217+166-1008+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-159;721-1038	1.000	160-720	8iob_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.825	114937.370	7.361	16.500	22.543	10.886	49.133	50.867	13.006	9.538	52.890

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	829.167	1623.369	1870.516	736.994	285.356	447.157	889.182	942.192	142.179	972.933	616.896

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.276	-1.234	-1.401	0.663	1.000	0.980	—	—	—	—	—	—

No JSON data available for plots.

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