Hg_chrom5_TN10mRNA_10419
Organism: Heterodera glycines Gene Locus: chr5:7084153-7092616 Feature type: polypeptideProtein Sequence
Length: 1,037
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 0.987 | 1.192 | 0.798 | 1.061 | 1.929 | 0.425 | 1.446 | 1.157 | 1.564 | 0.774 | 1.475 | 1.607 | 0.519 | 1.2 | 1.033 | 0.727 | 0.804 | 0.593 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9806
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKEARRSDRKSSNKK,KRLHFDEKVSMRRLRP,KKAISEADRILKKHPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.543
|
0.120
|
0.004
|
0.562
|
0.171
|
0.137
|
0.152
|
0.032
|
0.076
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009891
|
1.000
|
1.000
|
Hsc_gene_18245.t1
|
Hsc_gene_18245.t1
|
— |
Q14CX7.1 N-alpha-acetyltransferase 25, NatB auxiliary subunit [Homo sapiens]
|
KAI1721530.1 n-acetyltransferase B complex (NatB) non catalytic subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.926|GO:0110165_0.926|GO:0005622_0.800|GO:0005737_0.706|GO:0016020_0.643|GO:0005886_0.594|GO:0071944_0.594|GO:0043226_0.570|GO:0043229_0.549|GO:0043227_0.528|GO:0043231_0.504
|
IPR011990+24-160+|IPR019183+275-661+
|
— |
PF09797+275-661+N-acetyltransferase_B_complex_(NatB)_non_catalytic_subunit
|
— |
PTHR22767+16-644+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
868-944
|
2.000
|
1-867;945-1037
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
118594.210
|
6.238
|
-5.000
|
26.808
|
11.572
|
50.241
|
49.759
|
13.886
|
12.922
|
44.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1230.240
|
1018.266
|
1003.288
|
1411.493
|
1535.621
|
1197.543
|
1960.992
|
618.676
|
756.600
|
1535.144
|
1201.482
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.251
|
0.334
|
0.601
|
— |
-0.344
|
0.722
|
-1.056
|
1.805
|
— | — | — | — | — |
No JSON data available for plots.