Hg_chrom5_TN10mRNA_10423
Organism: Heterodera glycines Gene Locus: chr5:7111908-7116848 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.842 | 0.962 | 1.853 | 0.764 | 2.216 | 1.591 | 0.774 | 1.329 | 0.853 | 0.798 | 1.119 | 0.695 | 0.821 | 0.483 | 0.723 | 1.139 | 1.114 | 0.604 | 0.341 | 0.304 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9810
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKKRPIVFISPQLRKRVKI,KKHEDGLDEFKRPEKWRAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.191
|
0.024
|
0.645
|
0.126
|
0.043
|
0.160
|
0.029
|
0.108
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004160
|
2.000
|
1.000
|
Hsc_gene_18249.t1
|
Hsc_gene_18249.t1
|
— |
Q7K4Q5.1 Probable protein phosphatase CG10417 [Drosophila melanogaster]
|
KAF7635324.1 PPM-type phosphatase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470|GO:0043169
|
GO:0005575_0.906|GO:0110165_0.903|GO:0016020_0.764|GO:0005622_0.737|GO:0008150_0.737|GO:0043226_0.630|GO:0009987_0.619|GO:0043229_0.593|GO:0003674_0.584|GO:0043227_0.569|GO:0065007_0.561|GO:0005737_0.545|GO:0050789_0.541|GO:0043231_0.521|GO:0050794_0.502
|
IPR000222+52-60+|IPR001932+12-655_23-110_23-657_433-642_472-657+|IPR015655+22-657+|IPR036457+1-141_3-107_396-658_476-658+
|
SM00332+12-655+
|
PF00481+23-110_433-642+Protein_phosphatase_2C
|
— |
PTHR13832+22-657+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;114-485;670-677
|
2.000
|
9-113;486-669
|
2i0o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.971
|
75164.980
|
4.154
|
-76.000
|
37.075
|
7.090
|
62.186
|
37.814
|
13.589
|
23.486
|
51.551
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
1114.777
|
863.192
|
569.065
|
771.670
|
986.095
|
670.610
|
1245.523
|
622.343
|
825.857
|
2109.569
|
1559.407
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.831
|
-0.299
|
0.548
|
0.322
|
-0.542
|
0.905
|
— |
1.143
|
— | — | — | — | — |
No JSON data available for plots.