Hg_chrom5_TN10mRNA_10425
Organism: Heterodera glycines Gene Locus: chr5:7120815-7124086 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.842 | 1.032 | 1.954 | 0.886 | 2.492 | 1.258 | 0.918 | 0.935 | 0.831 | 0.663 | 1.027 | 0.825 | 0.649 | 0.539 | 0.525 | 1.101 | 1.302 | 0.673 | 0.359 | 0.137 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9812
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KKHEDGLDEFKRPEKWRAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.688
|
0.226
|
0.019
|
0.723
|
0.168
|
0.033
|
0.141
|
0.015
|
0.140
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004160
|
2.000
|
1.000
|
Hsc_gene_18249.t1
|
— | — |
P49595.2 Protein phosphatase ppm-1.G [Caenorhabditis elegans]
|
KAI1721516.1 protein phosphatase 2C domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470
|
GO:0005575_0.900|GO:0110165_0.897|GO:0016020_0.741|GO:0008150_0.730|GO:0005622_0.715|GO:0009987_0.601|GO:0043226_0.593|GO:0003674_0.580|GO:0043229_0.556|GO:0005737_0.553|GO:0043227_0.545|GO:0065007_0.540|GO:0050789_0.520
|
IPR001932+13-406_146-408_182-393_223-408+|IPR015655+153-408+|IPR036457+145-409_227-409+
|
SM00332+13-406+
|
PF00481+182-393+Protein_phosphatase_2C
|
— |
PTHR13832+153-408+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-236;421-428
|
1.000
|
237-420
|
2i0o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
46691.790
|
3.909
|
-66.000
|
36.916
|
5.140
|
61.916
|
38.084
|
11.215
|
25.701
|
55.607
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
290.146
|
119.893
|
97.595
|
97.365
|
117.529
|
77.336
|
418.664
|
254.407
|
133.785
|
725.504
|
471.910
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.531
|
-0.438
|
— | — |
-0.589
|
2.449
|
1.617
|
0.862
|
-2.554
|
— |
-2.492
|
— | — |
No JSON data available for plots.