SCN Proteipedia

Hg_chrom5_TN10mRNA_10429

Organism: Heterodera glycines Gene Locus: chr5:7157567-7173963 Feature type: polypeptide

Protein Sequence

Length: 3,458

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.355	0.699	1.02	0.249	2.154	2.351	0.623	1.113	0.848	0.606	0.574	1.735	0.627	1.051	1.245	1.165	0.962	0.727	0.645	0.272	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9816	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	PKPS,RKVLKLTDDAIKKFNR	—	—	—	—	—	—	0.000	—	—	0.363	0.179	0.018	0.733	0.141	0.174	0.155	0.019	0.408	0.134

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004161	1.000	2.000	Hsc_gene_18262.t1;Hsc_gene_18262.t2	Hsc_gene_18262.t1;Hsc_gene_18262.t2	—	W6RTA4.2 Protein clarinet [Caenorhabditis elegans]	CAD2197662.1 unnamed protein product [Meloidogyne enterolobii]	No	0.190

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.963\|GO:0005575_0.934\|GO:0110165_0.928\|GO:0009987_0.920\|GO:0065007_0.878\|GO:0016043_0.861\|GO:0071840_0.861\|GO:0050789_0.858\|GO:0051179_0.801\|GO:0006996_0.780\|GO:0051234_0.777\|GO:0051641_0.768\|GO:0006810_0.765\|GO:0051649_0.742\|GO:0007154_0.721\|GO:0023052_0.720\|GO:0016192_0.713\|GO:0051640_0.713\|GO:0061024_0.705\|GO:0051648_0.699\|GO:0034330_0.696\|GO:0050808_0.693\|GO:0016050_0.692\|GO:0007267_0.686\|GO:0007268_0.686\|GO:0030054_0.686\|GO:0045202_0.686\|GO:0098916_0.686\|GO:0099536_0.686\|GO:0099537_0.686\|GO:0046903_0.680\|GO:0140352_0.679\|GO:0032940_0.678\|GO:0048284_0.677\|GO:0061025_0.677\|GO:0006887_0.676\|GO:0006906_0.676\|GO:0090174_0.676\|GO:0099500_0.676\|GO:0140029_0.676\|GO:0098793_0.675\|GO:0099003_0.675\|GO:0099504_0.675\|GO:0006836_0.674\|GO:0007269_0.674\|GO:0023061_0.674\|GO:0045055_0.674\|GO:0099643_0.674\|GO:0016079_0.670\|GO:0034331_0.670\|GO:0043954_0.670\|GO:0048790_0.670\|GO:0061669_0.670\|GO:0097091_0.670\|GO:0097479_0.670\|GO:0098814_0.670\|GO:0099558_0.670\|GO:1990709_0.670\|GO:0048786_0.550	—	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-885;982-1066;1113-3458	2.000	886-981;1067-1112	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.860	382251.350	4.317	-260.500	30.654	6.246	56.854	43.146	12.117	18.537	50.521

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2595.357	2559.176	5497.873	1588.812	411.030	222.261	127.672	641.804	6483.746	2348.643	4120.830

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.871	-0.825	-1.680	-1.982	-0.873	-0.791	1.426	-2.189	—	—	—	—	—

No JSON data available for plots.

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