SCN Proteipedia

Hg_chrom5_TN10mRNA_10430

Organism: Heterodera glycines Gene Locus: chr5:7177568-7186340 Feature type: polypeptide

Protein Sequence

Length: 1,761

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.182	1.241	0.805	0.333	0.653	2.301	0.804	1.76	0.53	0.898	0.31	1.77	0.678	1.496	1.379	1.436	1.024	0.576	1.223	0.935	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9817	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	24-44	0.975	55-76	0.983	—	—	0.000	—	—	0.299	0.133	0.022	0.651	0.124	0.109	0.065	0.066	0.469	0.091

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004162	3.000	0.000	0.000	Hsc_gene_18262.t1;Hsc_gene_18262.t2	—	W6RTA4.2 Protein clarinet [Caenorhabditis elegans]	KAI1726202.1 c2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006887\|GO:0016020\|GO:0031267	GO:0005575_0.904\|GO:0110165_0.904\|GO:0008150_0.876\|GO:0009987_0.834\|GO:0065007_0.716\|GO:0050789_0.708\|GO:0005622_0.676\|GO:0016043_0.673\|GO:0071840_0.673\|GO:0016020_0.656\|GO:0003674_0.633\|GO:0050794_0.633\|GO:0043226_0.612\|GO:0051179_0.585\|GO:0005488_0.579\|GO:0051234_0.561\|GO:0006810_0.559\|GO:0071944_0.539\|GO:0005515_0.508	IPR000008+1589-1712_1605-1711_1605-1713+\|IPR001478+1365-1444_1379-1454_1379-1457_1380-1452+\|IPR035892+1583-1717_1585-1715+\|IPR036034+1337-1458_1357-1457+\|IPR039032+957-1730+	SM00228+1379-1457+\|SM00239+1605-1711+	PF00168+1605-1713+C2_domain\|PF00595+1380-1452+PDZ_domain	—	PTHR12157+957-1730+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-88;295-362;413-801;840-1367;1445-1594	5.000	89-294;363-412;802-839;1368-1444;1595-1761	1rh8_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.906	193950.520	8.338	39.000	20.670	10.733	51.278	48.722	12.323	8.348	55.537

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2125.215	6007.334	6195.654	2044.375	775.330	566.590	427.135	1627.805	2932.911	481.550	1532.134

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.185	-1.692	-1.491	-1.430	-0.439	-0.398	1.419	-1.789	2.490	—	—	—	—

No JSON data available for plots.

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