Hg_chrom5_TN10mRNA_10431
Organism: Heterodera glycines Gene Locus: chr5:7190340-7198838 Feature type: polypeptideProtein Sequence
Length: 940
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.225 | 1.336 | 0.658 | 0.954 | 0.957 | 0.846 | 0.836 | 0.851 | 0.969 | 1.078 | 0.693 | 1.377 | 1.3 | 1.084 | 1.216 | 1.596 | 0.75 | 0.87 | 0.491 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9818
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PPKKSSSKR
|
5-25
|
0.971
|
— | — | — | — |
0.000
|
— | — |
0.225
|
0.190
|
0.016
|
0.720
|
0.144
|
0.310
|
0.305
|
0.074
|
0.436
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009895
|
1.000
|
1.000
|
Hsc_gene_18261.t2
|
Hsc_gene_18261.t1
|
— |
Q09219.2 Copine family protein 5 [Caenorhabditis elegans]
|
KAF7635787.1 Copine domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005544
|
GO:0005575_0.920|GO:0110165_0.918|GO:0016020_0.764|GO:0008150_0.724|GO:0009987_0.637|GO:0043226_0.601|GO:0043227_0.550|GO:0071944_0.523|GO:0005622_0.515
|
IPR010734+404-631+|IPR036465+380-575+|IPR045052+39-207+
|
— |
PF07002+404-631+Copine
|
— |
PTHR10857+39-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
631-713;770-847;915-940
|
3.000
|
1-630;714-769;848-914
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
101507.020
|
8.294
|
19.000
|
21.596
|
8.936
|
46.383
|
53.617
|
12.234
|
9.362
|
56.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
349.824
|
551.678
|
1095.489
|
403.732
|
59.915
|
44.324
|
38.078
|
252.654
|
374.341
|
332.521
|
350.444
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
-0.588
|
-1.331
|
-2.783
|
— | — |
2.411
|
-2.588
|
— | — | — | — | — |
No JSON data available for plots.