Hg_chrom5_TN10mRNA_10435
Organism: Heterodera glycines Gene Locus: chr5:7214819-7218503 Feature type: polypeptideProtein Sequence
Length: 619
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 1.09 | 1.028 | 0.668 | 1.723 | 1.698 | 0.25 | 0.969 | 1.221 | 1.485 | 1.224 | 1.52 | 1.032 | 0.777 | 1.616 | 0.854 | 0.53 | 0.661 | 0.373 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9822
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
44-64
|
0.979
|
50-76
|
0.999
|
— | — |
0.000
|
— | — |
0.606
|
0.056
|
0.008
|
0.736
|
0.057
|
0.034
|
0.057
|
0.004
|
0.059
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004157
|
2.000
|
1.000
|
Hsc_gene_18256.t1
|
Hsc_gene_18256.t1
|
— | — |
KAI3410007.1 kinetochore-associated Ndc80 complex subunit ndc80 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031262|GO:0051315
|
GO:0005575_0.938|GO:0110165_0.932|GO:0005622_0.918|GO:0043226_0.870|GO:0043229_0.847|GO:0008150_0.760|GO:0009987_0.729|GO:0043228_0.728|GO:0043232_0.728|GO:0005737_0.668|GO:0065007_0.668|GO:0003674_0.661|GO:0005488_0.635|GO:0071840_0.625|GO:0005515_0.618|GO:0016043_0.615|GO:0006996_0.570|GO:0005694_0.568|GO:0098687_0.557|GO:0000775_0.556|GO:0007017_0.533|GO:0007010_0.526|GO:0016020_0.520|GO:0000226_0.515|GO:0007049_0.513|GO:0022402_0.513|GO:0048285_0.511|GO:0000280_0.510|GO:0005856_0.506
|
IPR005550+4-608_76-194+|IPR038273+76-193+
|
— |
PF03801+76-194+HEC/Ndc80p_family
|
— |
PTHR10643+4-608+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54;606-619
|
1.000
|
55-605
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
72117.510
|
7.402
|
6.000
|
33.926
|
8.401
|
54.443
|
45.557
|
17.932
|
15.994
|
39.580
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
565.097
|
127.717
|
115.514
|
472.168
|
596.323
|
459.937
|
894.035
|
284.228
|
258.010
|
1172.573
|
780.617
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.374
|
1.749
|
2.139
|
0.305
|
-0.359
|
0.970
|
-0.810
|
1.800
|
— | — | — | — | — |
No JSON data available for plots.