SCN Proteipedia

Hg_chrom5_TN10mRNA_10439

Organism: Heterodera glycines Gene Locus: chr5:7245872-7248773 Feature type: polypeptide

Protein Sequence

Length: 186

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.063	1.25	0.782	2.225	0.717	0.827	1.536	1.882	0.717	0.509	0.652	2.846	0.747	0.724	0.658	1.69	0.793	0.815	0.0	0.791	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9826	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-ppJ2_pJ2	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	9-54	0.959	—	—	0.000	—	—	0.765	0.083	0.015	0.420	0.065	0.034	0.081	0.008	0.072	0.123

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001953	4.000	0.000	0.000	Hsc_gene_18253.t1;Hsc_gene_18253.t2	—	P41999.1 Nuclear hormone receptor family member nhr-10 [Caenorhabditis elegans]	KAI1729057.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.906\|GO:0065007_0.821\|GO:0003674_0.818\|GO:0050789_0.811\|GO:0005575_0.802\|GO:0110165_0.795\|GO:0009987_0.777\|GO:0050794_0.777\|GO:0005488_0.764\|GO:0005622_0.716\|GO:0043226_0.684\|GO:0043229_0.667\|GO:0097159_0.653\|GO:0003676_0.650\|GO:0008152_0.642\|GO:0019222_0.639\|GO:0031323_0.639\|GO:0044237_0.639\|GO:0050896_0.638\|GO:0043170_0.629\|GO:0060255_0.629\|GO:0009058_0.626\|GO:0009059_0.626\|GO:0010467_0.626\|GO:0044249_0.626\|GO:0009889_0.621\|GO:0010556_0.619\|GO:0031326_0.619\|GO:0003677_0.617\|GO:0010468_0.610\|GO:0043565_0.601\|GO:0044238_0.595\|GO:0080090_0.594\|GO:0003690_0.593\|GO:1990837_0.593\|GO:0006139_0.571\|GO:0016070_0.571\|GO:0032774_0.571\|GO:0034654_0.571\|GO:0090304_0.571\|GO:0141187_0.571\|GO:0006351_0.564\|GO:0019219_0.563\|GO:0051252_0.563\|GO:0006355_0.552\|GO:2001141_0.552\|GO:0051716_0.519\|GO:0032501_0.517\|GO:0006357_0.510\|GO:0006366_0.510	IPR001628+89-160_89-164_91-159_92-108_92-118_108-123_141-149_149-157+\|IPR013088+82-170+\|IPR049636+92-160+\|IPR050274+86-161+	SM00399+89-160+	PF00105+91-159+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+84-181+Nuclear_Hormone_Receptor_family	PTHR24083+86-161+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	181-186	1.000	1-180	6fx0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.922	19319.600	6.791	1.500	19.892	9.140	45.161	54.839	11.290	8.602	63.978

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	102.701	55.310	148.139	101.629	28.067	27.321	19.959	11.916	279.331	92.689	172.678

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.189	0.739	-0.433	-1.891	—	—	-1.308	0.887	—	—	—	—	—

No JSON data available for plots.

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