Hg_chrom5_TN10mRNA_10440
Organism: Heterodera glycines Gene Locus: chr5:7311590-7312972 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.998 | 1.497 | 0.78 | 0.296 | 0.429 | 0.88 | 1.022 | 1.931 | 0.858 | 1.044 | 0.65 | 1.515 | 1.192 | 1.651 | 0.701 | 1.042 | 1.196 | 1.301 | 0.33 | 0.884 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9827
|
— | — |
1.444
|
3.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.369
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.467
|
0.272
|
0.039
|
0.583
|
0.172
|
0.176
|
0.138
|
0.021
|
0.189
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000539
|
5.000
|
2.000
|
Hsc_gene_18728.t1;Hsc_gene_4935.t1
|
— | — |
O62275.1 Argonaute protein wago-4 [Caenorhabditis elegans]
|
AAK94490.1 PAZ/Piwi domain protein [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0008150_0.840|GO:0005575_0.712|GO:0110165_0.706|GO:0005622_0.632|GO:0065007_0.611|GO:0009987_0.599|GO:0008152_0.597|GO:0050789_0.597|GO:0032502_0.556|GO:0043170_0.547|GO:0005737_0.539|GO:0043226_0.532|GO:0043229_0.527|GO:0050794_0.524|GO:0044237_0.518|GO:0048856_0.509|GO:0009058_0.506
|
IPR003165+74-178+|IPR012337+74-177+|IPR036397+62-211+
|
— |
PF02171+74-178+Piwi_domain
|
— |
PTHR22891+75-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
233-233
|
1.000
|
1-232
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.932
|
24981.370
|
8.479
|
6.500
|
18.455
|
11.588
|
42.918
|
57.082
|
11.588
|
6.867
|
60.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
51.541
|
11.319
|
14.801
|
16.741
|
17.807
|
11.768
|
26.293
|
14.721
|
2.747
|
180.890
|
104.543
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.172
|
— |
0.980
|
-6.151
|
— | — | — | — |
No JSON data available for plots.