Hg_chrom5_TN10mRNA_10442
Organism: Heterodera glycines Gene Locus: chr5:7340461-7348963 Feature type: polypeptideProtein Sequence
Length: 1,342
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.326 | 1.074 | 0.745 | 0.874 | 0.795 | 2.121 | 1.198 | 2.459 | 0.546 | 1.067 | 0.508 | 1.052 | 0.683 | 0.946 | 0.973 | 1.533 | 0.928 | 0.61 | 0.287 | 0.263 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9829
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR
|
— | — |
17-108
|
0.792
|
— | — |
0.005
|
— | — |
0.872
|
0.127
|
0.011
|
0.391
|
0.049
|
0.049
|
0.042
|
0.016
|
0.072
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004165
|
1.000
|
2.000
|
Hsc_gene_18275.t1;Hsc_gene_18275.t2
|
Hsc_gene_18275.t1;Hsc_gene_18275.t2
|
— |
Q9N4B8.4 Nuclear hormone receptor family member nhr-41 [Caenorhabditis elegans]
|
KAF7633584.1 Nuclear receptor domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.868|GO:0009987_0.816|GO:0003674_0.797|GO:0005488_0.797|GO:0065007_0.774|GO:0050789_0.765|GO:0050794_0.762|GO:0005575_0.751|GO:0097159_0.746|GO:0003676_0.745|GO:0110165_0.738|GO:0008152_0.689|GO:0019222_0.689|GO:0031323_0.689|GO:0044237_0.689|GO:0003677_0.686|GO:0005622_0.680|GO:0043170_0.676|GO:0060255_0.676|GO:0009058_0.675|GO:0009059_0.675|GO:0009889_0.675|GO:0010556_0.675|GO:0031326_0.675|GO:0044249_0.675|GO:0044238_0.674|GO:0080090_0.674|GO:0010467_0.673|GO:0006139_0.669|GO:0016070_0.669|GO:0090304_0.669|GO:0032774_0.666|GO:0034654_0.666|GO:0141187_0.666|GO:0043565_0.655|GO:0010468_0.653|GO:0019219_0.649|GO:0051252_0.649|GO:0006351_0.639|GO:0043226_0.638|GO:2001141_0.636|GO:0006355_0.632|GO:0043229_0.627|GO:0032502_0.604|GO:0048856_0.604|GO:0032501_0.602|GO:0006357_0.568|GO:0006366_0.568|GO:0007275_0.556|GO:0048731_0.541|GO:0050896_0.527|GO:0003690_0.515|GO:0016020_0.515|GO:1990837_0.508
|
IPR000536+707-847+|IPR001628+72-143_72-147_74-141_75-91_75-101_91-106_124-132_132-140+|IPR013088+69-165+|IPR035500+681-898_693-848_1062-1164+|IPR050274+697-894+
|
SM00399+72-143+
|
PF00104+707-847+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+74-141+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000015+68-170+Nuclear_receptor_subfamily_2,_group_C,_member_1
|
PTHR24083+697-894+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;151-673;945-1117;1163-1342
|
3.000
|
21-150;674-944;1118-1162
|
7xv6_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
141417.050
|
7.164
|
23.000
|
21.908
|
8.644
|
51.192
|
48.808
|
13.040
|
8.867
|
58.048
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkorange
|
592.861
|
832.579
|
234.210
|
729.170
|
1097.510
|
2455.482
|
396.530
|
419.113
|
112.759
|
197.477
|
161.169
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.057
|
-0.329
|
1.746
|
0.558
|
1.178
|
-2.624
|
-2.664
|
— | — | — | — | — | — |
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