SCN Proteipedia

Hg_chrom5_TN10mRNA_10444

Organism: Heterodera glycines Gene Locus: chr5:7389311-7398066 Feature type: polypeptide

Protein Sequence

Length: 2,141

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.831	1.347	0.764	0.757	0.981	1.413	0.523	1.378	1.453	1.294	0.701	1.676	1.194	1.114	0.991	1.181	0.926	0.934	0.359	0.893	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9831	—	—	1.556	2.000	2.000	1.000	2.000	1.000	1.000	2.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.832

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	QPKRP,KRPKRQIKLVQDNHRKLIR	—	—	—	—	—	—	0.000	—	—	0.499	0.062	0.012	0.619	0.186	0.123	0.122	0.127	0.085	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001323	2.000	3.000	Hsc_gene_12576.t1;Hsc_gene_2106.t1;Hsc_gene_2106.t2	Hsc_gene_12575.t1;Hsc_gene_12576.t1;Hsc_gene_12600.t1;Hsc_gene_12604.t1;Hsc_gene_14857.t1;Hsc_gene_2106.t1;Hsc_gene_2106.t2;Hsc_gene_2107.t1	—	Q20937.3 CCR4-NOT transcription complex subunit let-711 [Caenorhabditis elegans]	KAI1717100.1 CCR4-Not complex component, not1 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0017148\|GO:0030015	GO:0008150_0.968\|GO:0005575_0.800\|GO:0110165_0.785\|GO:0009987_0.783\|GO:0005622_0.763\|GO:0065007_0.758\|GO:0050789_0.752\|GO:0032502_0.748\|GO:0005737_0.653\|GO:0032501_0.607\|GO:0050794_0.596\|GO:0043226_0.565\|GO:0043229_0.553\|GO:0008152_0.551\|GO:0043170_0.551\|GO:0019222_0.539\|GO:0031323_0.539\|GO:0044237_0.539\|GO:0006139_0.532\|GO:0044238_0.532\|GO:0009058_0.530\|GO:0009059_0.530\|GO:0010467_0.530\|GO:0044249_0.530\|GO:0080090_0.530\|GO:0060255_0.528\|GO:0090304_0.521\|GO:0048518_0.520\|GO:0009889_0.516\|GO:0010556_0.516\|GO:0031326_0.516\|GO:0010468_0.515\|GO:0016070_0.509	IPR007196+1069-1402+\|IPR024557+616-763+\|IPR032191+275-500+\|IPR032193+29-183+\|IPR038535+23-192+\|IPR040398+26-807+	—	PF04054+1069-1402+CCR4-Not_complex_component,_Not1\|PF12842+616-763+CCR4-Not_complex,_Not1_subunit,_domain_of_unknown_function_DUF3819\|PF16415+275-500+CCR4-NOT_transcription_complex_subunit_1_CAF1-binding_domain\|PF16417+29-183+CCR4-NOT_transcription_complex_subunit_1_TTP_binding_domain	—	PTHR13162+26-807+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;1271-1319;1830-2073;2130-2141	3.000	2-1270;1320-1829;2074-2129	4c0d_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.723	239848.450	6.988	16.500	22.326	10.556	47.548	52.452	12.237	10.089	49.603

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	magenta	3000.664	3713.467	3263.301	3041.081	2982.992	2688.702	5497.283	2571.655	2331.679	2469.717	2410.558

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.417	-0.425	—	—	—	1.042	—	1.238	—	—	—	—	—

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