SCN Proteipedia

Hg_chrom5_TN10mRNA_10446

Organism: Heterodera glycines Gene Locus: chr5:7412803-7422468 Feature type: polypeptide

Protein Sequence

Length: 974

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.182	0.86	1.139	0.389	1.198	1.185	0.782	1.335	1.232	1.193	0.778	1.51	1.169	0.79	1.383	0.616	0.909	0.778	1.106	1.208	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9833	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.367	0.194	0.022	0.658	0.104	0.283	0.117	0.125	0.141	0.084

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009900	1.000	1.000	Hsc_gene_18280.t1	Hsc_gene_18280.t1	—	Q10663.2 Bifunctional glyoxylate cycle protein [Caenorhabditis elegans]	UET07939.1 isocitrate lyase [Meloidogyne incognita]	No	-0.200

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0004451\|GO:0004474\|GO:0006097\|GO:0019752	GO:0008150_0.828\|GO:0005575_0.770\|GO:0110165_0.766\|GO:0003674_0.706\|GO:0005622_0.690\|GO:0005737_0.635\|GO:0003824_0.613\|GO:0016020_0.606\|GO:0009987_0.569\|GO:0008152_0.540\|GO:0043226_0.508	IPR001465+604-837+\|IPR006252+446-971_461-969_461-970+\|IPR006254+21-252_21-253+\|IPR011076+433-970+\|IPR015813+9-435+\|IPR018523+192-197+\|IPR039556+57-370+\|IPR040442+8-436+\|IPR044856+853-969+\|IPR046363+443-851+\|IPR048355+853-969+\|IPR048356+448-509+	—	PF00463+21-252+Isocitrate_lyase_family\|PF01274+604-837+Malate_synthase,_TIM_barrel_domain\|PF20656+448-509+Malate_synthase,_N-terminal_domain\|PF20659+853-969+Malate_synthase,_C-terminal	G3DSA:1.20.1220.12:FF:000001+852-970+Malate_synthase\|G3DSA:3.20.20.360:FF:000001+444-851+Malate_synthase\|G3DSA:3.20.20.60:FF:000005+5-436+Isocitrate_lyase	PTHR42902+446-971+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-974	7rbx_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.539	110304.180	6.391	-2.000	28.029	12.423	46.201	53.799	14.579	13.450	46.920

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	purple	4965.975	2885.379	5294.723	3061.001	4712.717	12550.258	5903.461	9814.291	2107.440	3562.376	2938.832

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.648	—	-0.683	0.591	1.428	-1.079	—	-0.595	—	—	—	—	—

No JSON data available for plots.

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