Hg_chrom5_TN10mRNA_10449
Organism: Heterodera glycines Gene Locus: chr5:7446326-7453666 Feature type: polypeptideProtein Sequence
Length: 916
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.927 | 1.092 | 1.27 | 0.527 | 1.601 | 0.98 | 0.52 | 0.6 | 1.334 | 1.372 | 0.91 | 1.284 | 1.456 | 0.819 | 1.136 | 0.92 | 0.77 | 0.728 | 1.176 | 0.867 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9836
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRP,KRRRR,KRANQLRKWATKKRIGK,RKSGEFACLRAVFRLKRD
|
— | — | — | — | — | — |
0.411
|
— | — |
0.078
|
0.096
|
0.032
|
0.145
|
0.263
|
0.210
|
0.295
|
0.031
|
0.746
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009903
|
1.000
|
1.000
|
Hsc_gene_18285.t1
|
Hsc_gene_18285.t1
|
— |
O93430.1 Glycine receptor subunit alphaZ1 [Danio rerio]
|
KAI1728207.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.965|GO:0009987_0.931|GO:0005575_0.909|GO:0110165_0.887|GO:0016020_0.849|GO:0051179_0.800|GO:0071944_0.795|GO:0006810_0.788|GO:0051234_0.788|GO:0005886_0.787|GO:0003674_0.783|GO:0065007_0.763|GO:0050789_0.730|GO:0055085_0.678|GO:0050794_0.657|GO:0006811_0.656|GO:0007154_0.653|GO:0034220_0.651|GO:0050896_0.647|GO:0023052_0.646|GO:0051716_0.634|GO:0032501_0.619|GO:0005215_0.598|GO:0007267_0.598|GO:0022857_0.595|GO:0022803_0.592|GO:0015267_0.591|GO:0030054_0.590|GO:0005216_0.589|GO:0015075_0.589|GO:0007268_0.578|GO:0045202_0.578|GO:0098916_0.578|GO:0099536_0.578|GO:0099537_0.578|GO:0022836_0.575|GO:0015276_0.563|GO:0022834_0.563|GO:0098660_0.556|GO:0007165_0.555|GO:0005230_0.552|GO:0065008_0.536|GO:0015698_0.519|GO:0006820_0.518|GO:0006821_0.517|GO:0098656_0.517|GO:0098661_0.517|GO:1902476_0.515
|
IPR006028+754-774_780-801_814-835_884-904+|IPR006029+758-854+|IPR006201+548-847+|IPR006202+552-723+|IPR018000+668-682+|IPR036719+752-904+|IPR036734+546-748_553-750+|IPR038050+749-915+
|
— |
PF02931+552-723+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+758-854+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000055+749-915+Ligand-Gated_ion_Channel|G3DSA:2.70.170.10:FF:000052+546-748+Ligand-Gated_ion_Channel
|
PTHR18945+548-847+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
43-146;305-415
|
3.000
|
1-42;147-304;416-916
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
104658.520
|
4.546
|
-40.500
|
29.367
|
10.917
|
49.017
|
50.983
|
12.773
|
16.594
|
45.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
413.192
|
254.597
|
771.822
|
89.433
|
28.350
|
79.941
|
53.326
|
146.721
|
24.066
|
1255.595
|
727.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.371
|
-1.647
|
-3.001
|
-1.690
|
1.510
|
-0.575
|
— |
-1.314
|
-5.824
|
— |
-4.973
|
— | — |
No JSON data available for plots.