SCN Proteipedia

Hg_chrom5_TN10mRNA_10450

Organism: Heterodera glycines Gene Locus: chr5:7455785-7467763 Feature type: polypeptide

Protein Sequence

Length: 1,641

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.992	0.765	1.108	0.294	1.209	1.313	0.813	1.889	0.704	1.309	0.609	1.47	1.083	0.984	1.878	0.879	0.849	0.877	1.406	0.502	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9837	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.883

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRRR,RRKR,RRRGGRGPEARRKHH,KRGGEKDNRRRRRK.	—	—	89-111	0.999	—	—	0.000	—	—	0.280	0.070	0.008	0.263	0.209	0.256	0.378	0.012	0.465	0.176

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004167	1.000	2.000	Hsc_gene_18287.t1;Hsc_gene_18287.t2	Hsc_gene_18287.t1;Hsc_gene_18287.t2	—	Q6P179.2 Endoplasmic reticulum aminopeptidase 2 [Homo sapiens]	KAI1726189.1 peptidase family m1 domain-containing protein [Ditylenchus destructor]	No	-0.110

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006508\|GO:0008237\|GO:0008270	GO:0005575_0.849\|GO:0110165_0.849\|GO:0003674_0.826\|GO:0008150_0.808\|GO:0016020_0.716\|GO:0005622_0.672\|GO:0003824_0.643\|GO:0043226_0.611\|GO:0071944_0.611\|GO:0016787_0.597\|GO:0140096_0.590\|GO:0005886_0.585\|GO:0008233_0.576\|GO:0043229_0.548\|GO:0009987_0.521	IPR001930+462-477_510-525_589-599+\|IPR014782+559-607_643-802+\|IPR024571+1274-1548+\|IPR027268+538-817+\|IPR034016+308-813+\|IPR042097+291-528_296-527+\|IPR045357+353-520+\|IPR050344+1189-1552+	—	PF01433+559-607_643-802+Peptidase_family_M1_domain\|PF11838+1274-1548+ERAP1-like_C-terminal_domain\|PF17900+353-520+Peptidase_M1_N-terminal_domain	—	PTHR11533+1189-1552+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25;71-125;172-297;821-1217;1622-1641	4.000	26-70;126-171;298-820;1218-1621	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.660	185941.930	7.627	29.000	30.347	11.213	50.091	49.909	17.002	13.346	47.837

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	773.529	1164.011	530.019	579.543	493.539	445.482	249.482	242.776	33.905	1969.442	1139.926

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.365	-1.143	0.238	-0.264	—	-0.826	-0.980	—	-5.985	4.287	—	—	—

No JSON data available for plots.

Back to Browser