Hg_chrom5_TN10mRNA_10451
Organism: Heterodera glycines Gene Locus: chr5:7475150-7476044 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.537 | 1.431 | 1.026 | 0.884 | 1.453 | 0.657 | 0.061 | 0.256 | 1.595 | 1.04 | 1.01 | 1.81 | 1.567 | 0.888 | 1.57 | 1.758 | 0.757 | 0.699 | 1.183 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9838
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.686
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
2-32
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.809
|
0.186
|
0.047
|
0.208
|
0.059
|
0.163
|
0.098
|
0.106
|
0.024
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000422
|
6.000
|
2.000
|
Hsc_gene_18013.t1;Hsc_gene_18123.t1
|
Hsc_gene_18013.t1
|
— | — |
KAF7633751.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.670
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.915|GO:0110165_0.905|GO:0005622_0.876|GO:0016020_0.834|GO:0043226_0.830|GO:0043229_0.813|GO:0043227_0.799|GO:0005737_0.796|GO:0043231_0.783|GO:0005634_0.689|GO:0003674_0.612|GO:0005488_0.587|GO:0031974_0.579|GO:0043233_0.579|GO:0070013_0.579|GO:0031981_0.575|GO:0005515_0.569|GO:0005654_0.563|GO:0008150_0.502
|
IPR008906+111-186+|IPR012337+7-189+|IPR052035+1-195+
|
— |
PF05699+111-186+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+1-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
22839.010
|
6.895
|
0.500
|
29.231
|
10.769
|
54.872
|
45.128
|
14.872
|
14.359
|
45.641
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
100.041
|
1.246
|
2.696
|
82.315
|
89.283
|
47.954
|
5.263
|
14.011
|
104.026
|
268.620
|
198.080
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.911
|
5.034
|
— |
-0.881
|
-3.179
|
-1.885
|
-1.272
|
— | — | — | — | — |
No JSON data available for plots.