Hg_chrom5_TN10mRNA_10453
Organism: Heterodera glycines Gene Locus: chr5:7487173-7492119 Feature type: polypeptideProtein Sequence
Length: 503
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 0.971 | 0.651 | 0.686 | 0.795 | 1.02 | 0.497 | 1.392 | 1.016 | 1.451 | 0.452 | 1.403 | 1.602 | 1.338 | 1.42 | 1.079 | 0.782 | 1.175 | 2.141 | 1.403 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9840
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.643
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
11-33
|
0.999
|
51-72
|
0.986
|
— | — |
0.000
|
— | — |
0.125
|
0.089
|
0.002
|
0.264
|
0.610
|
0.203
|
0.867
|
0.011
|
0.120
|
0.315
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009905
|
1.000
|
1.000
|
Hsc_gene_18289.t1
|
Hsc_gene_18289.t1
|
— |
Q93834.3 Glycosyltransferase family 92 protein F59C6.8 [Caenorhabditis elegans]
|
KAI6200510.1 protein of unknown function DUF23 domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008166+148-380+|IPR052012+36-486+
|
— |
PF01697+148-380+Glycosyltransferase_family_92
|
— |
PTHR21645+36-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-503
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
58111.070
|
8.697
|
15.000
|
21.074
|
16.103
|
41.551
|
58.449
|
12.724
|
8.350
|
47.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
281.986
|
17.502
|
4.463
|
61.888
|
135.649
|
119.353
|
31.224
|
44.319
|
1.896
|
1076.867
|
616.165
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.203
|
1.684
|
3.905
|
1.100
|
— |
-1.925
|
-1.542
|
— |
-9.300
|
5.328
|
— | — | — |
No JSON data available for plots.