SCN Proteipedia

Hg_chrom5_TN10mRNA_10456

Organism: Heterodera glycines Gene Locus: chr5:7535352-7543084 Feature type: polypeptide

Protein Sequence

Length: 1,075

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.385	1.839	0.66	0.16	0.388	2.266	0.842	3.302	0.537	0.955	0.381	1.86	0.724	1.288	0.74	1.794	0.732	0.677	0.358	0.356	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9843	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK	—	—	16-56	0.949	—	—	0.000	—	—	0.920	0.100	0.004	0.409	0.064	0.052	0.033	0.046	0.047	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009907	1.000	1.000	Hsc_gene_18294.t1	Hsc_gene_18294.t1	—	P41970.2 ETS domain-containing protein Elk-3 [Homo sapiens]	KAI1726221.1 ets-domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0006357\|GO:0043565	GO:0008150_0.947\|GO:0009987_0.850\|GO:0065007_0.807\|GO:0050789_0.798\|GO:0050794_0.793\|GO:0005575_0.787\|GO:0110165_0.778\|GO:0003674_0.769\|GO:0005488_0.728\|GO:0005622_0.719\|GO:0008152_0.719\|GO:0043170_0.719\|GO:0019222_0.712\|GO:0031323_0.712\|GO:0044237_0.712\|GO:0009058_0.710\|GO:0009059_0.692\|GO:0009889_0.692\|GO:0010556_0.692\|GO:0031326_0.692\|GO:0044249_0.692\|GO:0060255_0.692\|GO:0097159_0.692\|GO:0044238_0.687\|GO:0016020_0.686\|GO:0010467_0.685\|GO:0010468_0.684\|GO:0080090_0.684\|GO:0003676_0.681\|GO:0043226_0.663\|GO:0043229_0.663\|GO:0006139_0.659\|GO:0016070_0.656\|GO:0090304_0.656\|GO:0034654_0.652\|GO:0032774_0.650\|GO:0141187_0.650\|GO:0019219_0.646\|GO:0051252_0.646\|GO:0006351_0.635\|GO:0006355_0.635\|GO:2001141_0.635\|GO:0003677_0.623\|GO:0043565_0.623\|GO:0048518_0.623\|GO:0048522_0.613\|GO:0043227_0.609\|GO:0003690_0.593\|GO:1990837_0.593\|GO:0043231_0.590\|GO:0009893_0.570\|GO:0010604_0.563\|GO:0032502_0.563\|GO:0048856_0.563\|GO:0031325_0.557\|GO:0009891_0.553\|GO:0005634_0.552\|GO:0031328_0.552\|GO:0000976_0.549\|GO:0001067_0.549\|GO:0010557_0.545\|GO:0045935_0.525\|GO:0051254_0.525\|GO:1902680_0.503	IPR000418+363-448_364-377_364-444_365-444_366-374_388-406_407-425_410-425_426-444+\|IPR036388+328-453+\|IPR036390+362-446+\|IPR046328+235-445+	SM00413+363-448+	PF00178+365-444+Ets-domain	—	PTHR11849+235-445+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-308;455-1011	2.000	309-454;1012-1075	8zh9_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.955	114379.830	8.304	37.500	18.698	10.884	52.465	47.535	12.744	5.953	59.163

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	violet	1712.915	2244.073	1664.777	2405.530	2036.289	1763.396	2115.330	1614.746	1386.690	1262.432	1315.685

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.659	—	0.638	-0.272	-0.193	0.271	—	0.530	—	—	—	—	—

No JSON data available for plots.

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