Hg_chrom5_TN10mRNA_10458
Organism: Heterodera glycines Gene Locus: chr5:7593420-7597453 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 0.619 | 1.057 | 1.002 | 1.13 | 1.614 | 0.49 | 1.453 | 1.291 | 1.276 | 0.587 | 1.709 | 0.942 | 1.024 | 1.482 | 1.176 | 0.913 | 0.734 | 1.304 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9845
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.141
|
0.933
|
0.009
|
0.308
|
0.051
|
0.069
|
0.079
|
0.044
|
0.037
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004169
|
2.000
|
1.000
|
Hsc_gene_18299.t1
|
Hsc_gene_18299.t1
|
— |
Q19427.3 NAD-capped RNA hydrolase ndx-9 [Caenorhabditis elegans]
|
KAH7726501.1 CRE-NDX-9 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.769|GO:0110165_0.769|GO:0008150_0.685|GO:0016020_0.685|GO:0003674_0.666|GO:0005622_0.664|GO:0043226_0.598|GO:0005737_0.584|GO:0043229_0.579|GO:0043227_0.564|GO:0003824_0.553|GO:0043231_0.547|GO:0008152_0.545|GO:0044238_0.529|GO:0009987_0.526
|
IPR000086+247-376_253-366+|IPR015797+205-378+|IPR020084+283-304+|IPR049734+251-409+
|
— |
PF00293+253-366+NUDIX_domain
|
G3DSA:3.90.79.10:FF:000074+249-413+Mutt/nudix_family_protein-like_protein
|
PTHR11383+110-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-413
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
47134.660
|
6.495
|
0.000
|
26.634
|
10.896
|
49.395
|
50.605
|
14.044
|
12.591
|
46.731
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
654.046
|
656.269
|
604.439
|
524.903
|
593.928
|
472.551
|
1205.712
|
590.729
|
554.003
|
702.749
|
639.001
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.347
|
-0.459
|
— |
0.147
|
-0.316
|
1.362
|
— |
1.172
|
— | — | — | — | — |
No JSON data available for plots.