Hg_chrom5_TN10mRNA_10459
Organism: Heterodera glycines Gene Locus: chr5:7593420-7597545 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.827 | 0.64 | 1.001 | 0.949 | 1.147 | 1.529 | 0.464 | 1.376 | 1.325 | 1.364 | 0.591 | 1.889 | 0.956 | 1.014 | 1.451 | 1.245 | 0.865 | 0.695 | 1.235 | 0.944 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9845
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
13-54
|
0.993
|
— | — |
0.000
|
— | — |
0.113
|
0.923
|
0.016
|
0.299
|
0.054
|
0.078
|
0.143
|
0.020
|
0.043
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004169
|
2.000
|
1.000
|
Hsc_gene_18299.t1
|
Hsc_gene_18299.t1
|
— |
Q19427.3 NAD-capped RNA hydrolase ndx-9 [Caenorhabditis elegans]
|
KAH7726501.1 CRE-NDX-9 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.772|GO:0110165_0.772|GO:0016020_0.689|GO:0008150_0.686|GO:0005622_0.666|GO:0003674_0.665|GO:0043226_0.602|GO:0005737_0.584|GO:0043229_0.583|GO:0043227_0.568|GO:0043231_0.551|GO:0003824_0.548|GO:0008152_0.542|GO:0009987_0.530|GO:0044238_0.528
|
IPR000086+270-399_276-389+|IPR015797+228-401+|IPR020084+306-327+|IPR049734+274-432+
|
— |
PF00293+276-389+NUDIX_domain
|
G3DSA:3.90.79.10:FF:000074+272-436+Mutt/nudix_family_protein-like_protein
|
PTHR11383+133-434+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-436
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
49835.890
|
6.496
|
0.000
|
26.147
|
11.009
|
48.853
|
51.147
|
13.761
|
12.385
|
45.872
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
654.046
|
656.269
|
604.439
|
524.903
|
593.928
|
472.551
|
1205.712
|
590.729
|
554.003
|
702.749
|
639.001
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.347
|
-0.459
|
— |
0.147
|
-0.316
|
1.362
|
— |
1.172
|
— | — | — | — | — |
No JSON data available for plots.