SCN Proteipedia

Hg_chrom5_TN10mRNA_10463

Organism: Heterodera glycines Gene Locus: chr5:7621900-7629170 Feature type: polypeptide

Protein Sequence

Length: 755

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.402	0.924	0.602	1.142	0.64	0.645	0.915	0.464	1.001	1.736	0.462	2.337	1.067	1.248	0.622	1.4	1.021	0.903	1.325	0.273	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9849	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RHRR,KRNHHVAEMMRRKAD	—	—	48-70	0.997	—	—	0.000	—	—	0.059	0.131	0.015	0.116	0.542	0.352	0.278	0.027	0.627	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009911	1.000	1.000	Hsc_gene_18303.t1	Hsc_gene_18303.t1	—	Q21339.3 Sodium-dependent high-affinity dicarboxylate transporter 3 [Caenorhabditis elegans]	KAI1713692.1 sodium:sulfate symporter transmembrane region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020\|GO:0022857\|GO:0055085	GO:0008150_0.951\|GO:0009987_0.903\|GO:0003674_0.848\|GO:0051179_0.840\|GO:0051234_0.838\|GO:0006810_0.836\|GO:0055085_0.772\|GO:0005215_0.715\|GO:0022857_0.715\|GO:0005575_0.676\|GO:0110165_0.676\|GO:0016020_0.628\|GO:0098660_0.618\|GO:0006811_0.614\|GO:0034220_0.603\|GO:0071944_0.591\|GO:0006812_0.588\|GO:0030001_0.588\|GO:0015318_0.585\|GO:0098655_0.584\|GO:0098662_0.581\|GO:0015075_0.572\|GO:0006814_0.571\|GO:0005886_0.566\|GO:0008324_0.564\|GO:0022804_0.562\|GO:0015291_0.560\|GO:0035725_0.560\|GO:0022890_0.555\|GO:0046873_0.551\|GO:0015081_0.542\|GO:0022853_0.540\|GO:0015293_0.538\|GO:0015294_0.537\|GO:0015370_0.535\|GO:0015711_0.530\|GO:0015849_0.515\|GO:0046942_0.514\|GO:1903825_0.514\|GO:1905039_0.514\|GO:0008514_0.504\|GO:0006835_0.503\|GO:0015740_0.503	IPR001898+135-695+	—	PF00939+135-695+Sodium:sulfate_symporter_transmembrane_region	—	PTHR10283+134-709+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-19	1.000	20-755	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.803	79359.330	5.512	-4.500	14.172	7.417	36.689	63.311	7.020	7.152	58.808

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	812.104	334.811	701.269	1175.690	1526.968	1664.310	1023.288	1472.388	40.117	560.845	337.676

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.838	1.675	0.853	0.346	—	-0.692	-0.281	-0.384	-3.929	5.075	—	—	—

No JSON data available for plots.

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