SCN Proteipedia

Hg_chrom5_TN10mRNA_10466

Organism: Heterodera glycines Gene Locus: chr5:7654272-7661271 Feature type: polypeptide

Protein Sequence

Length: 513

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.748	1.451	0.78	1.008	0.747	1.649	0.627	2.729	1.126	1.212	0.561	1.835	1.083	1.162	1.313	1.114	0.671	0.886	0.6	0.803	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9852	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.978

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KKMPNVFQNLASCKRVFR	—	—	—	—	—	—	0.000	—	—	0.641	0.313	0.030	0.587	0.082	0.132	0.152	0.067	0.190	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009913	1.000	1.000	Hsc_gene_18306.t1	Hsc_gene_18306.t1	—	Q9U9Y8.1 Serine/threonine kinase NLK [Caenorhabditis elegans]	KAI1729007.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	-0.130

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004707\|GO:0005524\|GO:0006468	GO:0008150_0.984\|GO:0050896_0.918\|GO:0065007_0.858\|GO:0050789_0.854\|GO:0009987_0.836\|GO:0003674_0.811\|GO:0003824_0.811\|GO:0140096_0.811\|GO:0050794_0.799\|GO:0016740_0.793\|GO:0051716_0.783\|GO:0005575_0.777\|GO:0004672_0.776\|GO:0016301_0.776\|GO:0016772_0.776\|GO:0016773_0.776\|GO:0110165_0.773\|GO:0023052_0.760\|GO:0007154_0.759\|GO:0007165_0.742\|GO:0005622_0.722\|GO:0004674_0.675\|GO:0048518_0.556\|GO:0048583_0.550\|GO:0016020_0.545\|GO:0035556_0.538\|GO:0032502_0.537\|GO:0048856_0.537\|GO:0008152_0.523\|GO:0032501_0.515\|GO:0043170_0.513\|GO:0006950_0.509\|GO:0005488_0.506	IPR000719+118-406_119-406+\|IPR003527+153-255+\|IPR008271+239-251+\|IPR011009+114-409+\|IPR017441+124-147+\|IPR050117+118-446+	SM00220+118-406+	PF00069+119-406+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000040+201-420+Mitogen-activated_protein_kinase\|G3DSA:3.30.200.20:FF:000961+120-200+Mitogen-activated_protein_kinase	PTHR24055+118-446+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-117;506-513	1.000	118-505	4zsg_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.852	58072.120	8.348	21.000	24.366	12.865	48.928	51.072	15.595	8.772	48.928

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	turquoise	723.262	1231.142	282.021	304.175	860.716	1856.659	636.268	832.003	37.762	884.832	521.802

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.356	-2.154	0.218	1.468	1.125	-1.536	-1.271	—	-4.666	—	—	—	—

No JSON data available for plots.

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