Hg_chrom5_TN10mRNA_10469
Organism: Heterodera glycines Gene Locus: chr5:7666493-7668317 Feature type: polypeptideProtein Sequence
Length: 235
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 0.891 | 1.083 | 0.88 | 1.489 | 0.873 | 0.709 | 0.851 | 0.662 | 1.035 | 1.805 | 2.253 | 1.182 | 0.491 | 1.216 | 0.669 | 1.256 | 0.967 | 0.327 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9855
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKKKKKAK,KKTAFTNFTEICRLLKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.724
|
0.105
|
0.019
|
0.557
|
0.239
|
0.026
|
0.179
|
0.002
|
0.061
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009916
|
1.000
|
1.000
|
Hsc_gene_18310.t1
|
Hsc_gene_18310.t1
|
— |
Q21230.4 Eukaryotic translation initiation factor 2 subunit 2 [Caenorhabditis elegans]
|
KAF7635024.1 eIF2B_5 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0006413
|
GO:0008150_0.766|GO:0005575_0.742|GO:0110165_0.732|GO:0009987_0.708|GO:0005622_0.602|GO:0005737_0.505
|
IPR002735+92-205_95-205+|IPR016189+69-177+|IPR016190+174-210+|IPR045196+23-229+
|
SM00653+95-205+
|
PF01873+92-205+Domain_found_in_IF2B/IF5
|
G3DSA:3.30.30.170:FF:000001+67-211+Eukaryotic_translation_initiation_factor_2_subunit
|
PTHR23001+23-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60
|
1.000
|
61-235
|
8s8j_l
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
26673.640
|
9.151
|
9.000
|
34.468
|
8.511
|
54.043
|
45.957
|
19.574
|
14.894
|
46.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
2125.886
|
960.881
|
1595.395
|
2567.679
|
3035.507
|
2873.051
|
2454.416
|
2015.923
|
2380.711
|
1701.650
|
1992.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
1.281
|
0.795
|
0.209
|
— |
-0.216
|
-0.616
|
0.428
|
— | — | — | — | — |
No JSON data available for plots.