Hg_chrom5_TN10mRNA_10479
Organism: Heterodera glycines Gene Locus: chr5:7743949-7745583 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.54 | 1.023 | 1.022 | 1.096 | 1.752 | 0.502 | 0.815 | 0.611 | 1.25 | 1.222 | 1.408 | 1.007 | 0.951 | 0.799 | 1.497 | 0.594 | 0.601 | 0.852 | 1.317 | 1.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9863
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.641
|
0.432
|
0.098
|
0.496
|
0.262
|
0.073
|
0.047
|
0.002
|
0.128
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002232
|
1.000
|
3.000
|
Hsc_gene_13496.t1;Hsc_gene_806.t1;Hsc_gene_9532.t1
|
Hsc_gene_10098.t1;Hsc_gene_12283.t1;Hsc_gene_14603.t1;Hsc_gene_14821.t1;Hsc_gene_14822.t1;Hsc_gene_14822.t2;Hsc_gene_15286.t1;Hsc_gene_19616.t1;Hsc_gene_19617.t1;Hsc_gene_26678.t1;Hsc_gene_2975.t1;Hsc_gene_3213.t1;Hsc_gene_3213.t2;Hsc_gene_806.t1;Hsc_gene_9532.t1
|
— | — |
CAD2168411.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003677|GO:0003887|GO:0006260
|
— |
IPR004868+152-331+|IPR023211+151-191+|IPR043502+148-380+
|
— |
PF03175+152-331+DNA_polymerase_type_B,_organellar_and_viral
|
— |
PTHR33568+78-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
47742.680
|
7.658
|
4.500
|
33.985
|
12.225
|
48.166
|
51.834
|
17.848
|
16.137
|
42.298
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
291.885
|
6.219
|
7.857
|
3.954
|
3.324
|
3.079
|
0.710
|
3.873
|
39.748
|
1236.304
|
723.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
-2.310
|
-5.123
|
— |
-8.308
|
— |
4.620
|
No JSON data available for plots.