SCN Proteipedia

Hg_chrom5_TN10mRNA_10481

Organism: Heterodera glycines Gene Locus: chr5:7752949-7754572 Feature type: polypeptide

Protein Sequence

Length: 133

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.612	0.525	1.094	0.778	0.877	1.35	0.716	1.128	2.172	1.422	0.684	1.769	0.418	0.868	1.381	1.719	0.863	0.797	0.578	0.442	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9865	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-J4_Female	0.962

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.795	0.138	0.005	0.547	0.022	0.014	0.085	0.006	0.077	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009917	1.000	1.000	Hsc_gene_18312.t1	Hsc_gene_18312.t1	—	O73917.1 Paired box protein Pax-6 [Oryzias latipes]	XP_061891639.1 paired box protein Pax-6-like [Entelurus aequoreus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006355	GO:0008150_0.914\|GO:0005575_0.831\|GO:0110165_0.824\|GO:0009987_0.805\|GO:0005622_0.762\|GO:0043226_0.720\|GO:0043229_0.709\|GO:0065007_0.706\|GO:0050789_0.671\|GO:0003674_0.661\|GO:0050794_0.655\|GO:0032502_0.653\|GO:0048856_0.653\|GO:0008152_0.648\|GO:0016020_0.647\|GO:0032501_0.642\|GO:0009058_0.636\|GO:0043170_0.636\|GO:0044237_0.636\|GO:0044238_0.635\|GO:0005488_0.634\|GO:0044249_0.625\|GO:0009059_0.622\|GO:0010467_0.620\|GO:0006139_0.611\|GO:0034654_0.609\|GO:0090304_0.601\|GO:0141187_0.599\|GO:0016070_0.597\|GO:0032774_0.596\|GO:0006351_0.589\|GO:0007275_0.587\|GO:0043227_0.585\|GO:0019222_0.573\|GO:0031323_0.570\|GO:0043231_0.563\|GO:0080090_0.563\|GO:0060255_0.561\|GO:0048513_0.557\|GO:0009889_0.554\|GO:0031326_0.551\|GO:0048731_0.551\|GO:0010468_0.550\|GO:0010556_0.550\|GO:0097159_0.545\|GO:0003676_0.537\|GO:0019219_0.537\|GO:0048518_0.535\|GO:0051252_0.534\|GO:2001141_0.534\|GO:0006355_0.533\|GO:0003677_0.529\|GO:0048522_0.522\|GO:0043565_0.505\|GO:0003690_0.501\|GO:0009653_0.501	IPR001523+10-128_10-130_11-128_15-30_33-51_53-70+\|IPR009057+18-130+\|IPR036388+72-132+\|IPR043565+8-129+	SM00351+10-128+	PF00292+11-128+'Paired_box'_domain	—	PTHR45636+8-129+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6	1.000	7-133	1mdm_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.774	14695.910	7.215	1.500	24.812	6.015	49.624	50.376	13.534	11.278	48.872

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	tan	107.964	56.244	84.369	53.669	61.464	176.527	77.469	74.078	194.098	107.836	144.806

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.355	—	-0.543	—	1.538	-1.178	-1.358	—	—	—	—	—	—

No JSON data available for plots.

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