Hg_chrom5_TN10mRNA_10483
Organism: Heterodera glycines Gene Locus: chr5:7773232-7778406 Feature type: polypeptideProtein Sequence
Length: 554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.154 | 0.756 | 1.017 | 0.934 | 0.722 | 0.741 | 0.602 | 1.173 | 1.123 | 1.122 | 0.547 | 1.805 | 1.203 | 1.18 | 1.363 | 1.496 | 1.243 | 0.875 | 0.278 | 0.743 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,RKRK,KKTYRCRQNGQCEIRKEMR,KKNNAAVSSSSSAPIERKR
|
— | — |
51-85
|
0.856
|
— | — |
0.000
|
— | — |
0.874
|
0.089
|
0.015
|
0.382
|
0.022
|
0.035
|
0.026
|
0.005
|
0.032
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002233
|
2.000
|
2.000
|
Hsc_gene_18315.t1;Hsc_gene_18315.t2
|
Hsc_gene_18314.t1;Hsc_gene_18315.t1;Hsc_gene_18315.t2
|
— |
O17933.3 Nuclear hormone receptor family member nhr-53 [Caenorhabditis elegans]
|
KAI1717607.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.911|GO:0003674_0.863|GO:0065007_0.860|GO:0009987_0.850|GO:0050789_0.844|GO:0050794_0.807|GO:0005575_0.805|GO:0008152_0.782|GO:0009058_0.782|GO:0110165_0.775|GO:0044237_0.770|GO:0044249_0.770|GO:0005488_0.768|GO:0009059_0.762|GO:0043170_0.762|GO:0019222_0.754|GO:0031323_0.754|GO:0044238_0.745|GO:0060255_0.740|GO:0010467_0.731|GO:0009889_0.728|GO:0031326_0.728|GO:0010556_0.724|GO:0005622_0.719|GO:0006139_0.718|GO:0080090_0.715|GO:0097159_0.714|GO:0043226_0.712|GO:0043229_0.696|GO:0034654_0.688|GO:0003676_0.687|GO:0010468_0.686|GO:0090304_0.681|GO:0141187_0.681|GO:0019219_0.680|GO:0016070_0.679|GO:0032774_0.677|GO:0051252_0.653|GO:0006351_0.645|GO:0006355_0.638|GO:2001141_0.638|GO:0003677_0.622|GO:0043565_0.622|GO:0016020_0.578|GO:0003690_0.573|GO:1990837_0.572|GO:0000976_0.531|GO:0001067_0.531|GO:0006357_0.529|GO:0006366_0.529
|
IPR000536+307-554_346-543_354-530+|IPR001628+41-112_41-116_43-111_44-60_44-70_60-75_93-101_101-109+|IPR013088+36-142+|IPR035500+319-545_352-549+|IPR049636+44-119+
|
SM00399+41-112+|SM00430+354-530+
|
PF00104+346-543+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+43-111+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000030+36-140+Nuclear_Hormone_Receptor_family
|
PTHR46011+42-543+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;169-285
|
2.000
|
2-168;286-554
|
1ynw_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
60531.980
|
7.707
|
8.500
|
22.563
|
9.567
|
46.751
|
53.249
|
12.635
|
9.928
|
56.498
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
323.446
|
538.723
|
520.130
|
361.345
|
346.190
|
368.774
|
545.881
|
489.014
|
202.574
|
74.375
|
129.317
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.279
|
-0.713
|
-0.418
|
— | — |
0.577
|
— | — | — | — | — | — | — |
No JSON data available for plots.