SCN Proteipedia

Hg_chrom5_TN10mRNA_10484

Organism: Heterodera glycines Gene Locus: chr5:7773253-7778406 Feature type: polypeptide

Protein Sequence

Length: 555

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.131	0.712	0.983	0.87	0.751	0.832	0.558	1.351	1.161	1.266	0.491	1.908	1.201	1.455	1.471	1.287	1.034	0.819	0.416	0.795	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9867	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.969

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKR,RKRK,KKTYRCRQNGQCEIRKEMR,KKNNAAVSSSSSAPIERKR	49-73	0.908	44-78	0.856	—	—	0.000	—	—	0.858	0.099	0.014	0.355	0.022	0.039	0.026	0.008	0.026	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002233	2.000	2.000	Hsc_gene_18315.t1;Hsc_gene_18315.t2	Hsc_gene_18314.t1;Hsc_gene_18315.t1;Hsc_gene_18315.t2	—	O17933.3 Nuclear hormone receptor family member nhr-53 [Caenorhabditis elegans]	KAI1717607.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.910\|GO:0003674_0.868\|GO:0065007_0.861\|GO:0009987_0.850\|GO:0050789_0.848\|GO:0050794_0.805\|GO:0005575_0.801\|GO:0008152_0.788\|GO:0009058_0.788\|GO:0044237_0.773\|GO:0044249_0.773\|GO:0110165_0.773\|GO:0005488_0.770\|GO:0043170_0.761\|GO:0009059_0.760\|GO:0019222_0.754\|GO:0031323_0.752\|GO:0044238_0.752\|GO:0060255_0.742\|GO:0010467_0.735\|GO:0009889_0.730\|GO:0031326_0.730\|GO:0010556_0.726\|GO:0006139_0.721\|GO:0005622_0.717\|GO:0080090_0.717\|GO:0097159_0.714\|GO:0043226_0.710\|GO:0043229_0.696\|GO:0003676_0.690\|GO:0010468_0.688\|GO:0034654_0.688\|GO:0019219_0.681\|GO:0016070_0.680\|GO:0032774_0.680\|GO:0090304_0.680\|GO:0141187_0.680\|GO:0051252_0.652\|GO:0006351_0.642\|GO:0006355_0.636\|GO:2001141_0.636\|GO:0003677_0.620\|GO:0043565_0.620\|GO:0016020_0.575\|GO:0003690_0.571\|GO:1990837_0.570\|GO:0000976_0.530\|GO:0001067_0.530\|GO:0006357_0.530\|GO:0006366_0.530\|GO:0048518_0.502	IPR000536+308-555_347-544_355-531+\|IPR001628+34-105_34-109_36-104_37-53_37-63_53-68_86-94_94-102+\|IPR013088+29-135+\|IPR035500+320-546_353-550+\|IPR049636+37-112+	SM00399+34-105+\|SM00430+355-531+	PF00104+347-544+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+36-104+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+29-133+Nuclear_Hormone_Receptor_family	PTHR46011+35-544+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;198-250	2.000	6-197;251-555	3e00_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.789	61333.340	7.891	10.500	23.063	10.270	44.685	55.315	13.153	9.910	53.694

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	323.446	538.723	520.130	361.345	346.190	368.774	545.881	489.014	202.574	74.375	129.317

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.279	-0.713	-0.418	—	—	0.577	—	—	—	—	—	—	—

No JSON data available for plots.

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