Hg_chrom5_TN10mRNA_10485
Organism: Heterodera glycines Gene Locus: chr5:7778992-7780700 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.18 | 1.011 | 0.791 | 0.666 | 0.886 | 1.239 | 1.093 | 0.483 | 0.537 | 0.783 | 0.439 | 1.705 | 0.939 | 0.65 | 1.282 | 2.277 | 1.109 | 0.878 | 0.743 | 0.71 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9868
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
8-35
|
0.991
|
26-66
|
0.965
|
— | — |
0.000
|
— | — |
0.069
|
0.953
|
0.102
|
0.099
|
0.011
|
0.117
|
0.075
|
0.017
|
0.082
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009919
|
1.000
|
1.000
|
Hsc_gene_18316.t1
|
Hsc_gene_18316.t1
|
— |
Q8T3X9.1 Iron-sulfur cluster assembly 1 homolog, mitochondrial [Drosophila melanogaster]
|
KAI1728098.1 iron-sulfur cluster biosynthesis domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016226|GO:0051536
|
GO:0005575_0.740|GO:0008150_0.703|GO:0110165_0.687|GO:0005622_0.572|GO:0016020_0.522
|
IPR000361+32-131+|IPR016092+32-135+|IPR017870+117-134+|IPR035903+31-125_31-136+|IPR050322+15-136+
|
— |
PF01521+32-131+Iron-sulphur_cluster_biosynthesis
|
G3DSA:2.60.300.12:FF:000001+31-136+Iron-binding_protein_IscA
|
PTHR10072+15-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-207
|
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
21933.150
|
6.459
|
0.000
|
19.807
|
7.729
|
51.691
|
48.309
|
10.145
|
9.662
|
61.836
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
318.333
|
364.733
|
255.354
|
330.304
|
444.008
|
383.819
|
649.375
|
292.127
|
160.999
|
252.062
|
213.035
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.745
|
-0.280
|
0.480
|
0.396
|
-0.196
|
0.769
|
-0.497
|
1.294
|
— | — | — | — | — |
No JSON data available for plots.