Hg_chrom5_TN10mRNA_10488
Organism: Heterodera glycines Gene Locus: chr5:7789859-7799103 Feature type: polypeptideProtein Sequence
Length: 1,115
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.043 | 1.001 | 0.848 | 0.773 | 1.031 | 1.863 | 0.641 | 1.435 | 1.036 | 1.382 | 0.639 | 1.477 | 1.096 | 0.88 | 0.933 | 1.256 | 1.029 | 0.951 | 0.276 | 0.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — |
2-33
|
0.889
|
— | — |
0.000
|
— | — |
0.272
|
0.150
|
0.006
|
0.446
|
0.239
|
0.426
|
0.322
|
0.042
|
0.526
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009921
|
1.000
|
1.000
|
Hsc_gene_18319.t1
|
Hsc_gene_18319.t1
|
— |
Q620W3.1 Protein EFR3 homolog [Caenorhabditis briggsae]
|
KAI1730683.1 protein EFR3 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.965|GO:0005575_0.938|GO:0110165_0.932|GO:0009987_0.926|GO:0051179_0.797|GO:0051641_0.740|GO:0016020_0.725|GO:0071944_0.682|GO:0005886_0.671|GO:0005622_0.597|GO:0065007_0.540|GO:0050789_0.526|GO:0005737_0.507
|
IPR011989+181-509+|IPR016024+68-598+|IPR049152+51-148+|IPR051851+9-1017+
|
— |
PF21052+51-148+EFR3,_armadillo_repeat
|
— |
PTHR12444+9-1017+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
691-793;848-1066
|
3.000
|
1-690;794-847;1067-1115
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
122536.960
|
6.143
|
-7.000
|
22.511
|
8.879
|
49.148
|
50.852
|
11.659
|
10.852
|
51.480
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
2787.935
|
2546.220
|
1219.367
|
910.733
|
1120.831
|
1281.861
|
1901.153
|
1309.346
|
1359.903
|
7318.720
|
4764.941
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.291
|
-1.620
|
-0.313
|
0.268
|
0.208
|
0.580
|
— |
0.681
|
— | — | — | — | — |
No JSON data available for plots.