Hg_chrom5_TN10mRNA_10489
Organism: Heterodera glycines Gene Locus: chr5:7799232-7801984 Feature type: polypeptideProtein Sequence
Length: 225
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 1.344 | 0.566 | 0.766 | 1.037 | 2.051 | 0.741 | 1.333 | 1.877 | 0.781 | 0.673 | 0.784 | 0.988 | 0.94 | 1.814 | 1.079 | 1.093 | 0.606 | 1.026 | 0.131 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9872
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— |
43-67
|
0.984
|
33-55
|
0.943
|
1-23
|
0.964
|
1.000
|
0.000
|
0.000
|
0.306
|
0.404
|
0.152
|
0.291
|
0.130
|
0.038
|
0.091
|
0.190
|
0.313
|
0.888
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009922
|
1.000
|
1.000
|
Hsc_gene_18320.t1
|
Hsc_gene_18320.t1
|
— | — |
KAH7730815.1 Protein F15B9.8 [Aphelenchus avenae]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.932|GO:0009987_0.874|GO:0065007_0.858|GO:0050789_0.851|GO:0050794_0.836|GO:0050896_0.807|GO:0051716_0.777|GO:0032501_0.776|GO:0032502_0.764|GO:0048856_0.764|GO:0023052_0.745|GO:0007154_0.743|GO:0007275_0.743|GO:0048731_0.731|GO:0007165_0.730|GO:0030154_0.724|GO:0048869_0.724|GO:0048583_0.713|GO:0010646_0.707|GO:0023051_0.707|GO:0009966_0.699|GO:0007399_0.697|GO:0007166_0.692|GO:0022008_0.692|GO:0048699_0.688|GO:0048870_0.682|GO:0016477_0.679|GO:0040011_0.677|GO:0003002_0.676|GO:0007389_0.676|GO:0030334_0.675|GO:0040012_0.675|GO:2000145_0.675|GO:0016055_0.674|GO:0030111_0.674|GO:0001764_0.670|GO:0007368_0.670|GO:0009799_0.670|GO:0009855_0.670|GO:0035545_0.670|GO:0060070_0.670|GO:0060828_0.670|GO:0060972_0.670|GO:0097402_0.670
|
IPR000884+147-194_152-188+|IPR036383+148-189+
|
— |
PF00090+152-188+Thrombospondin_type_1_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-149;225-225
|
1.000
|
150-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
25185.500
|
10.288
|
12.000
|
25.333
|
8.000
|
53.333
|
46.667
|
16.000
|
9.333
|
48.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
brown
|
229.514
|
228.315
|
107.975
|
60.282
|
554.511
|
1211.583
|
230.894
|
171.979
|
2.410
|
40.237
|
24.026
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.309
|
-2.058
|
-0.732
|
3.170
|
1.145
|
-2.386
|
-2.928
|
0.566
|
— |
4.892
|
4.167
|
— | — |