Hg_chrom5_TN10mRNA_10490
Organism: Heterodera glycines Gene Locus: chr5:7807197-7811238 Feature type: polypeptideProtein Sequence
Length: 446
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 1.147 | 1.182 | 0.464 | 1.495 | 1.61 | 0.534 | 1.121 | 1.096 | 1.636 | 1.121 | 2.11 | 1.059 | 0.345 | 1.281 | 0.641 | 0.735 | 0.747 | 0.345 | 1.253 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9873
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.840
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.688
|
0.135
|
0.011
|
0.521
|
0.113
|
0.132
|
0.212
|
0.004
|
0.081
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009923
|
1.000
|
1.000
|
Hsc_gene_18321.t1
|
Hsc_gene_18321.t1
|
— |
O01422.2 COP9 signalosome complex subunit 2 [Caenorhabditis elegans]
|
KAF7638139.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.872|GO:0005575_0.833|GO:0110165_0.831|GO:0005622_0.791|GO:0016020_0.736|GO:0043226_0.726|GO:0043229_0.701|GO:0009987_0.679|GO:0043227_0.665|GO:0043231_0.632|GO:0008152_0.578|GO:0044238_0.567|GO:0043170_0.560|GO:0005634_0.555|GO:0032991_0.534
|
IPR000717+251-413_328-407_342-434+|IPR036390+336-407+|IPR050871+7-441+
|
SM00088+342-434+|SM00753+166-340+
|
PF01399+328-407+PCI_domain
|
G3DSA:1.25.40.570:FF:000006+70-443+COP9_signalosome_complex_subunit_2
|
PTHR10678+7-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-446
|
6a73_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
51880.270
|
6.046
|
-3.000
|
31.390
|
10.762
|
51.570
|
48.430
|
15.919
|
15.471
|
39.686
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
1281.964
|
1048.644
|
926.642
|
1095.583
|
1614.005
|
1641.720
|
1972.381
|
1139.188
|
739.230
|
1514.858
|
1182.446
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.408
|
— |
0.351
|
0.527
|
— |
0.276
|
-0.633
|
0.936
|
— | — | — | — | — |
No JSON data available for plots.