Hg_chrom5_TN10mRNA_10493
Organism: Heterodera glycines Gene Locus: chr5:7824203-7834930 Feature type: polypeptideProtein Sequence
Length: 1,224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.121 | 1.159 | 0.698 | 0.31 | 1.321 | 2.158 | 0.885 | 0.94 | 0.545 | 0.574 | 0.928 | 1.922 | 0.658 | 1.178 | 1.351 | 1.284 | 1.192 | 0.805 | 0.943 | 0.288 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9876
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRRP
|
21-41
|
0.948
|
— | — | — | — |
0.000
|
— | — |
0.178
|
0.236
|
0.035
|
0.241
|
0.154
|
0.070
|
0.172
|
0.048
|
0.445
|
0.803
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009926
|
1.000
|
1.000
|
Hsc_gene_3414.t1
|
Hsc_gene_3414.t1
|
— | — |
RCN30073.1 thrombospondin type 1 domain protein [Ancylostoma caninum]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000884+129-171_132-171_132-176_1132-1183_1135-1180_1137-1176+|IPR036383+129-173_131-170+
|
SM00209+132-176_1135-1180+
|
PF00090+132-171_1137-1176+Thrombospondin_type_1_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
163-1132;1171-1224
|
2.000
|
1-162;1133-1170
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.881
|
134091.750
|
9.070
|
23.500
|
26.389
|
6.454
|
56.046
|
43.954
|
14.624
|
11.765
|
54.493
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
2467.899
|
455.849
|
98.200
|
156.775
|
4282.555
|
2337.294
|
343.924
|
267.478
|
215.434
|
7657.205
|
4467.874
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.444
|
-1.677
|
0.784
|
4.739
|
-0.857
|
-2.756
|
-3.238
|
0.506
|
-5.263
|
— | — | — | — |
No JSON data available for plots.