Hg_chrom5_TN10mRNA_10494
Organism: Heterodera glycines Gene Locus: chr5:7838099-7842609 Feature type: polypeptideProtein Sequence
Length: 580
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 0.922 | 0.69 | 1.011 | 1.063 | 2.343 | 0.739 | 1.379 | 0.92 | 1.095 | 0.653 | 1.826 | 0.527 | 1.127 | 1.689 | 1.182 | 0.876 | 1.019 | 0.663 | 0.558 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9877
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRSR,RRSNGRSTQKGKRRSS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.620
|
0.210
|
0.016
|
0.636
|
0.064
|
0.117
|
0.082
|
0.017
|
0.110
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009927
|
1.000
|
1.000
|
Hsc_gene_3416.t1
|
Hsc_gene_3416.t1
|
— |
P40809.1 GTPase-activating protein RacGAP84C [Drosophila melanogaster]
|
KAF7634995.1 Rac GTPase-activating protein 1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0008150_0.904|GO:0065007_0.868|GO:0009987_0.842|GO:0050789_0.831|GO:0005575_0.829|GO:0110165_0.820|GO:0050794_0.779|GO:0005622_0.728|GO:0050896_0.674|GO:0003674_0.647|GO:0023052_0.637|GO:0007154_0.635|GO:0051716_0.625|GO:0005488_0.618|GO:0007165_0.569|GO:0016020_0.562|GO:0005515_0.561
|
IPR000198+343-536_354-533_359-496+|IPR002219+277-327_278-327_292-328+|IPR008936+351-544_355-537+|IPR046349+290-327+
|
SM00109+278-327+|SM00324+354-533+
|
PF00130+292-328+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00620+359-496+RhoGAP_domain
|
— |
PTHR46199+38-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;65-260;544-580
|
2.000
|
4-64;261-543
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
65156.030
|
8.897
|
22.000
|
25.517
|
7.414
|
52.241
|
47.759
|
15.345
|
10.172
|
49.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
463.930
|
104.292
|
92.369
|
271.992
|
594.892
|
672.121
|
2757.092
|
177.739
|
15.536
|
266.608
|
159.006
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.406
|
1.246
|
1.667
|
1.098
|
— |
2.048
|
-2.033
|
4.102
|
-4.230
|
4.344
|
— | — | — |
No JSON data available for plots.