Hg_chrom5_TN10mRNA_10497
Organism: Heterodera glycines Gene Locus: chr5:7864532-7870483 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.217 | 0.756 | 0.525 | 0.498 | 0.963 | 1.759 | 0.817 | 1.444 | 0.642 | 1.22 | 0.656 | 1.911 | 1.203 | 0.417 | 1.621 | 1.702 | 1.184 | 0.656 | 0.833 | 0.319 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9880
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
FKRR,KRRS
|
35-61
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.252
|
0.448
|
0.024
|
0.544
|
0.151
|
0.263
|
0.218
|
0.066
|
0.524
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009929
|
1.000
|
1.000
|
Hsc_gene_3419.t3
|
Hsc_gene_3419.t1;Hsc_gene_3419.t2;Hsc_gene_3419.t3;Hsc_gene_3419.t4
|
— | — |
KAI1701349.1 globin-like protein 9 [Ditylenchus destructor]
|
No
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR009050+74-222+|IPR012292+76-233+|IPR044399+86-221+|IPR050532+66-246+
|
— | — | — |
PTHR46458+66-246+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-48;250-277
|
1.000
|
49-249
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
30492.410
|
10.328
|
14.000
|
23.827
|
9.386
|
53.069
|
46.931
|
15.162
|
8.664
|
50.542
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
612.698
|
117.466
|
739.603
|
498.527
|
209.919
|
52.721
|
114.017
|
348.669
|
697.945
|
1376.751
|
1085.834
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.426
|
1.949
|
-0.460
|
-1.278
|
-1.979
|
1.123
|
2.628
|
-1.472
|
— | — | — | — | — |
No JSON data available for plots.