SCN Proteipedia

Hg_chrom5_TN10mRNA_10498

Organism: Heterodera glycines Gene Locus: chr5:7877394-7889610 Feature type: polypeptide

Protein Sequence

Length: 1,198

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.242	1.029	0.85	0.864	0.793	1.07	0.954	0.918	1.02	1.286	0.594	1.178	1.113	0.803	1.567	1.324	0.944	0.683	0.899	0.687	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9881	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	0.976

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRRRR,RDAKRKS	—	—	50-101	0.902	—	—	0.000	—	—	0.125	0.065	0.022	0.128	0.213	0.226	0.168	0.009	0.862	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009930	1.000	1.000	Hsc_gene_3422.t1	Hsc_gene_3422.t1	—	Q8SPP9.2 Thyrotropin receptor [Sus scrofa]	KAI1701345.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020\|GO:0016500	GO:0008150_0.956\|GO:0009987_0.928\|GO:0065007_0.845\|GO:0050789_0.818\|GO:0005575_0.810\|GO:0110165_0.810\|GO:0050794_0.799\|GO:0003674_0.794\|GO:0023052_0.737\|GO:0007154_0.734\|GO:0050896_0.732\|GO:0051716_0.711\|GO:0016020_0.675\|GO:0007165_0.660\|GO:0071944_0.633\|GO:0005886_0.616\|GO:0060089_0.593\|GO:0038023_0.586\|GO:0005622_0.565\|GO:0007186_0.543\|GO:0010646_0.543\|GO:0023051_0.543\|GO:0032501_0.507	IPR000276+538-804_557-578_733-757_786-812+\|IPR002131+512-529_589-602_602-616_662-673_729-747+\|IPR017452+538-804+\|IPR026906+199-298+\|IPR032675+60-522+	—	PF00001+538-804+7_transmembrane_receptor_(rhodopsin_family)\|PF13306+199-298+BspA_type_Leucine_rich_repeat_region_(6_copies)	—	PTHR24372+240-969+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	359-432;876-1198	2.000	1-358;433-875	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.893	130720.240	8.973	37.000	22.871	9.349	46.494	53.506	13.439	9.432	54.007

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	turquoise	575.263	331.985	619.188	508.437	393.997	574.631	247.767	752.658	65.650	1181.788	703.443

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.670	0.478	-0.176	-0.400	0.559	-1.204	—	-1.463	-4.283	—	—	—	—

No JSON data available for plots.

Back to Browser