SCN Proteipedia

Hg_chrom5_TN10mRNA_10502

Organism: Heterodera glycines Gene Locus: chr5:7914398-7923611 Feature type: polypeptide

Protein Sequence

Length: 754

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.311	1.172	1.085	0.686	0.84	0.918	0.805	1.26	1.032	1.47	0.462	1.56	0.7	1.122	1.353	0.872	0.717	1.166	0.612	0.78	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9885	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal\|peroxisomal_targeting_signal	cytoplasm\|lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.356	0.226	0.031	0.717	0.178	0.608	0.319	0.164	0.259	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009933	1.000	1.000	Hsc_gene_3427.t1	Hsc_gene_3427.t1;Hsc_gene_3428.t1	—	Q9U518.1 L-asparaginase [Dirofilaria immitis]	KAI1715018.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004067\|GO:0005515\|GO:0006520	GO:0008150_0.873\|GO:0009987_0.803\|GO:0003674_0.715\|GO:0005575_0.647\|GO:0110165_0.635\|GO:0008152_0.623\|GO:0044238_0.588\|GO:0044237_0.582\|GO:0003824_0.511\|GO:0005622_0.502	IPR002110+557-633_583-612_583-615_616-645_660-702_682-711_682-714+\|IPR006033+228-511+\|IPR006034+150-626_151-207_154-506_155-499_156-167_212-511_258-276_437-455+\|IPR027473+386-514+\|IPR027474+155-368+\|IPR027475+259-269+\|IPR036152+151-515+\|IPR036770+532-643_556-736_652-742+\|IPR037152+153-385+\|IPR040919+387-498+\|IPR041725+155-498+	SM00248+583-612_616-645_682-711+\|SM00870+155-499+	PF00710+155-368+Asparaginase,_N-terminal\|PF12796+557-633+Ankyrin_repeats_(3_copies)\|PF13637+660-702+Ankyrin_repeats_(many_copies)\|PF17763+387-498+Glutaminase/Asparaginase_C-terminal_domain	G3DSA:3.40.50.1170:FF:000003+153-385+60_kDa_lysophospholipase\|G3DSA:3.40.50.40:FF:000001+386-513+L-asparaginase_1	PTHR11707+150-626+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-141	1.000	142-754	4r8l_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.662	82165.900	6.460	-0.500	23.210	8.488	42.308	57.692	12.202	11.008	55.040

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	1365.696	390.690	801.403	494.438	378.722	762.315	1969.324	650.804	163.462	3809.439	2246.877

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.808	0.203	-0.589	-0.417	1.025	1.380	-0.333	1.740	-4.661	—	-3.046	—	—

No JSON data available for plots.

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