Hg_chrom5_TN10mRNA_10505
Organism: Heterodera glycines Gene Locus: chr5:7954218-7960497 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 1.029 | 1.232 | 0.668 | 1.014 | 1.49 | 1.021 | 1.521 | 0.738 | 1.103 | 0.482 | 1.22 | 0.768 | 0.904 | 1.327 | 1.838 | 0.884 | 0.608 | 0.958 | 0.285 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9888
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.706
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
34-55
|
0.993
|
26-51
|
0.997
|
— | — |
0.000
|
— | — |
0.317
|
0.661
|
0.166
|
0.473
|
0.349
|
0.153
|
0.179
|
0.339
|
0.233
|
0.237
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002235
|
1.000
|
3.000
|
Hsc_gene_3432.t1;Hsc_gene_3432.t2;Hsc_gene_3432.t3
|
Hsc_gene_3432.t1;Hsc_gene_3432.t2
|
— | — |
CAD2173866.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
143-429;478-630;675-723
|
3.000
|
1-142;430-477;631-674
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
78191.970
|
5.488
|
-12.000
|
25.588
|
8.022
|
54.080
|
45.920
|
12.725
|
12.863
|
56.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1854.930
|
1288.378
|
1862.322
|
957.403
|
958.438
|
856.135
|
1158.731
|
1152.057
|
757.085
|
4459.955
|
2873.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.303
|
-0.566
|
-0.852
|
— | — |
0.446
|
— | — |
-2.659
|
— | — | — | — |
No JSON data available for plots.