Hg_chrom5_TN10mRNA_10506
Organism: Heterodera glycines Gene Locus: chr5:7969509-7972802 Feature type: polypeptideProtein Sequence
Length: 289
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.046 | 1.195 | 1.551 | 0.692 | 1.153 | 1.03 | 1.211 | 0.769 | 0.888 | 0.839 | 1.425 | 1.25 | 0.799 | 1.554 | 0.593 | 1.134 | 1.363 | 1.331 | 0.611 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9889
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
9-Migratory
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
RRCEVYARGRWAKSERK
|
— | — |
16-65
|
0.923
|
1-28
|
0.909
|
0.947
|
0.000
|
0.000
|
0.304
|
0.105
|
0.092
|
0.231
|
0.103
|
0.132
|
0.084
|
0.008
|
0.319
|
0.958
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002236
|
1.000
|
3.000
|
Hsc_gene_3433.t1;Hsc_gene_3433.t2;Hsc_gene_3433.t3
|
Hsc_gene_3433.t1;Hsc_gene_3433.t2;Hsc_gene_3433.t3
|
— | — |
KAI1720773.1 abnormal cell migration protein 18 [Ditylenchus destructor]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR040282+59-192+
|
— |
PF23003+57-118+Fibronectin_type_I_domain
|
— |
PTHR35572+59-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
32300.910
|
8.432
|
10.500
|
26.298
|
10.727
|
46.367
|
53.633
|
15.571
|
10.727
|
55.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
570.315
|
3.224
|
103.831
|
32.647
|
13.217
|
11.947
|
23.117
|
64.155
|
13.557
|
2390.407
|
1371.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.786
|
3.205
|
-1.562
|
-1.344
|
— |
0.964
|
2.324
|
-1.331
|
-7.560
|
— |
-6.946
|
— | — |