Hg_chrom5_TN10mRNA_10508
Organism: Heterodera glycines Gene Locus: chr5:7974890-7981872 Feature type: polypeptideProtein Sequence
Length: 968
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.372 | 1.97 | 2.273 | 0.427 | 2.187 | 1.271 | 1.919 | 0.465 | 0.367 | 0.209 | 1.174 | 0.729 | 0.287 | 0.457 | 2.804 | 0.472 | 0.423 | 0.188 | 0.318 | 0.76 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9890
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
extracellular
|
— |
KKRK,KRHR,RHRR,RKSK,RGGKRRG,RRKRTKKKKKKKRLH,KRWGRNPNNRNRKKIN,RRRNRVGGLFRRRKNG,RRKRGKGRDKNRKKNG,KIPRRKRTKKKKKKKR,RRPSKNRQGIGRKQKQK,RRQQNWLIGKLIRKREIKR,RKREIKRWGRNPNNRNRKK,KREIKRWGRNPNNRNRKKI,RRRRDGGRGTNGGGGGRRR,RRRDGGRGTNGGGGGRRRK,RRDGGRGTNGGGGGRRRKE,RKQKQKDEEEDDGGRKRGQ,RKRGQGNGRRRKKNGSRRK,KRGQGNGRRRKKNGSRRKD,KKNGEEDDEDEETVAGRRK
|
— | — | — | — | — | — |
0.043
|
— | — |
0.309
|
0.027
|
0.010
|
0.331
|
0.037
|
0.021
|
0.101
|
0.003
|
0.200
|
0.746
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001325
|
2.000
|
3.000
|
Hsc_gene_14298.t1;Hsc_gene_14298.t2;Hsc_gene_14298.t3
|
— | — | — |
KAF7624814.1 hypothetical protein Mgra_00009916 [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+867-903_921-958+
|
— |
PF01549+867-903_921-958+ShK_domain-like
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
62-866
|
2.000
|
1-61;867-968
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
109925.340
|
4.854
|
-35.500
|
48.037
|
4.959
|
67.355
|
32.645
|
22.417
|
25.620
|
51.033
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
723.860
|
13.667
|
356.471
|
247.458
|
73.137
|
41.598
|
45.691
|
143.202
|
3019.682
|
556.666
|
1612.244
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.479
|
4.044
|
-0.417
|
-1.791
|
-0.799
|
— |
1.684
|
-1.505
|
2.328
|
-3.422
|
-2.708
|
— | — |
No JSON data available for plots.