Hg_chrom5_TN10mRNA_10515
Organism: Heterodera glycines Gene Locus: chr5:8006166-8009389 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.759 | 0.475 | 1.039 | 0.704 | 1.905 | 1.047 | 0.875 | 1.224 | 1.179 | 0.827 | 1.051 | 1.681 | 0.68 | 0.628 | 1.916 | 0.7 | 1.138 | 1.175 | 0.0 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9897
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRREGLEQQYRKICR
|
— | — |
47-68
|
0.987
|
— | — |
0.000
|
— | — |
0.878
|
0.090
|
0.045
|
0.417
|
0.069
|
0.029
|
0.091
|
0.015
|
0.133
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004174
|
2.000
|
1.000
|
Hsc_gene_14297.t1
|
Hsc_gene_14297.t1
|
— |
Q66I61.1 STING ER exit protein [Danio rerio]
|
KAI1721515.1 UPF0428 protein CXorf56 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.902|GO:0005622_0.851|GO:0016020_0.817|GO:0043226_0.803|GO:0043229_0.783|GO:0043227_0.741|GO:0043231_0.707|GO:0005634_0.653
|
IPR029704+28-227+
|
— | — | — |
PTHR46355+28-227+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
182-245
|
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
27743.430
|
6.750
|
1.000
|
35.918
|
7.347
|
53.878
|
46.122
|
18.776
|
17.143
|
46.531
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
593.783
|
744.689
|
609.038
|
567.336
|
636.949
|
628.724
|
893.650
|
706.569
|
672.985
|
297.953
|
458.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.519
|
-0.529
|
— |
0.135
|
— |
0.518
|
— |
0.482
|
— | — | — | — | — |
No JSON data available for plots.