Hg_chrom5_TN10mRNA_10516
Organism: Heterodera glycines Gene Locus: chr5:8009473-8012588 Feature type: polypeptideProtein Sequence
Length: 371
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.564 | 0.439 | 0.441 | 0.093 | 1.213 | 0.622 | 0.738 | 0.674 | 0.898 | 0.291 | 2.042 | 9.196 | 0.225 | 0.311 | 3.686 | 0.539 | 1.37 | 0.49 | 1.659 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9898
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.486
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKKKRKSLAEREQRRRRN,RKKKRKSLAEREQRRRRNG,RSRRMRRKMMEEEKEDKGMGGGGRRMAAAGRMKMEMKLMMRMRKKAIKEVEEERGEREETKTGRKMVRRMMKMKKLLPEDGRADEKGTARMRRTIVGNRRARRRMMMMMKRKRMMKRVKSESRDEKHQTKMKTHWSRGQWKMMKRRRKKKRIKSESRDGKHQTKMKTHWSRGQWKMMKRRRKKKRIKSESRDGKHQIKRMKTLWNRGRWKMMKRRRKKKRKSLAEREQRRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.586
|
0.037
|
0.050
|
0.440
|
0.086
|
0.005
|
0.059
|
0.006
|
0.251
|
0.423
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
WP_073817119
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-269
|
1.000
|
270-371
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
45014.270
|
12.414
|
83.500
|
42.588
|
4.313
|
59.030
|
40.970
|
32.884
|
9.704
|
32.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
100.776
|
8.420
|
34.507
|
28.254
|
31.009
|
20.742
|
30.032
|
23.720
|
301.599
|
148.440
|
214.079
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.806
|
1.609
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.