Hg_chrom5_TN10mRNA_10519
Organism: Heterodera glycines Gene Locus: chr5:8027252-8035038 Feature type: polypeptideProtein Sequence
Length: 889
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.504 | 1.02 | 1.104 | 0.078 | 2.343 | 2.25 | 0.201 | 1.237 | 0.925 | 1.733 | 1.193 | 1.125 | 0.219 | 0.087 | 1.745 | 0.562 | 0.572 | 0.579 | 0.173 | 0.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9901
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRHKETQNALRKKDRRIKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.127
|
0.009
|
0.849
|
0.032
|
0.042
|
0.084
|
0.022
|
0.287
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009939
|
1.000
|
1.000
|
Hsc_gene_14291.t1
|
Hsc_gene_14291.t1
|
— |
P13392.2 Paramyosin [Dirofilaria immitis]
|
KAF7631159.1 Myosin_tail_1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016459
|
GO:0005575_0.888|GO:0110165_0.886|GO:0005622_0.878|GO:0008150_0.835|GO:0043226_0.800|GO:0043229_0.768|GO:0043228_0.741|GO:0043232_0.741|GO:0005737_0.733|GO:0009987_0.663|GO:0032991_0.637|GO:0005856_0.631|GO:0099080_0.615|GO:0099081_0.580|GO:0099512_0.580|GO:0003674_0.502
|
IPR002928+43-865+|IPR014751+600-651+
|
— |
PF01576+43-865+Myosin_tail
|
G3DSA:1.20.5.340:FF:000035+40-120+Paramyosin,_long_form|G3DSA:1.20.5.370:FF:000001+600-652+Myosin_heavy_chain
|
PTHR45615+42-856+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;151-281;655-724;831-889
|
3.000
|
25-150;282-654;725-830
|
6so3_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
102531.230
|
5.191
|
-22.000
|
39.033
|
4.837
|
59.618
|
40.382
|
18.898
|
20.135
|
37.008
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
15879.332
|
28647.730
|
41390.498
|
14286.176
|
5082.127
|
23907.549
|
607.042
|
53951.309
|
3999.549
|
3520.253
|
3725.666
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.302
|
-1.141
|
-1.427
|
-1.523
|
2.248
|
-5.291
|
1.069
|
-6.332
|
— |
2.004
|
— | — | — |
No JSON data available for plots.