Hg_chrom5_TN10mRNA_10520
Organism: Heterodera glycines Gene Locus: chr5:8035568-8039363 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.422 | 1.325 | 1.13 | 0.715 | 0.907 | 1.329 | 0.709 | 2.461 | 1.727 | 0.91 | 1.217 | 2.743 | 1.079 | 0.697 | 1.956 | 0.555 | 0.595 | 0.785 | 0.399 | 0.991 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9902
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
KRLHMLLKINSTRHRHKIR,RRDRSEYIDINIDNVRKGK,RRNLRGLRRHHRTKKRQKL,KKRQKLIKKMENQLKKRGL,RNLRGLRRHHRTKKRQKLIKKMENQLKKRG
|
34-54
|
0.990
|
— | — | — |
0.707
|
0.208
|
0.000
|
— |
0.184
|
0.242
|
0.029
|
0.139
|
0.120
|
0.032
|
0.234
|
0.015
|
0.137
|
0.891
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004176
|
1.000
|
2.000
|
Hsc_gene_14290.t1;Hsc_gene_14290.t2
|
Hsc_gene_14290.t1;Hsc_gene_14290.t2
|
— |
Q20191.5 Zinc metalloproteinase nas-13 [Caenorhabditis elegans]
|
KAF7635382.1 Metalloendopeptidase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.854|GO:0003674_0.641|GO:0005575_0.611|GO:0110165_0.611|GO:0032501_0.570|GO:0032502_0.528|GO:0048856_0.528|GO:0003824_0.513|GO:0009987_0.501
|
IPR001506+92-343_116-193_222-342+|IPR006026+104-285+|IPR024079+59-344+
|
SM00235+104-285+
|
PF01400+116-193_222-342+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+84-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-236
|
2.000
|
1-184;237-386
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
45518.570
|
10.226
|
32.500
|
34.197
|
12.694
|
52.591
|
47.409
|
22.539
|
11.658
|
39.896
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
311.032
|
19.550
|
125.839
|
158.581
|
60.546
|
17.058
|
17.260
|
46.520
|
798.036
|
595.229
|
682.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.458
|
2.881
|
0.440
|
-1.419
|
-1.815
|
— |
1.336
|
-1.284
|
— | — | — | — | — |