Hg_chrom5_TN10mRNA_10521
Organism: Heterodera glycines Gene Locus: chr5:8041380-8045232 Feature type: polypeptideProtein Sequence
Length: 280
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.914 | 0.914 | 0.909 | 0.862 | 0.714 | 0.824 | 1.446 | 1.786 | 1.032 | 1.014 | 0.812 | 1.471 | 0.595 | 1.099 | 0.875 | 1.378 | 1.347 | 0.866 | 0.549 | 0.315 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9903
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.586
|
0.189
|
0.034
|
0.453
|
0.080
|
0.204
|
0.239
|
0.033
|
0.274
|
0.382
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009940
|
1.000
|
1.000
|
Hsc_gene_14289.t1
|
Hsc_gene_14289.t1
|
— | — |
KAI6213930.1 CB1 cannabinoid receptor-interacting protein 1 [Aphelenchoides besseyi];KAI6236635.1 CB1 cannabinoid receptor-interacting protein 1 [Aphelenchoides besseyi]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0005575_0.893|GO:0110165_0.888|GO:0003674_0.869|GO:0009987_0.860|GO:0065007_0.822|GO:0005622_0.806|GO:0005488_0.804|GO:0050789_0.804|GO:0008152_0.792|GO:0050794_0.790|GO:0016020_0.786|GO:0050896_0.783|GO:0032501_0.762|GO:0043226_0.753|GO:0051716_0.744|GO:0043229_0.729|GO:0043227_0.722|GO:0007154_0.717|GO:0042221_0.717|GO:0051179_0.717|GO:0023052_0.716|GO:0006810_0.709|GO:0051234_0.709|GO:0007165_0.707|GO:0010646_0.701|GO:0048583_0.701|GO:0043231_0.698|GO:0023051_0.697|GO:1901700_0.697|GO:0065008_0.695|GO:0009966_0.694|GO:0009719_0.690|GO:0070887_0.690|GO:0032879_0.689|GO:0007166_0.688|GO:0065009_0.684|GO:0033993_0.683|GO:0051049_0.683|GO:1901698_0.683|GO:0009725_0.682|GO:0014070_0.682|GO:0055085_0.681|GO:0007267_0.680|GO:0036094_0.680|GO:1901701_0.680|GO:0071495_0.679|GO:0010038_0.678|GO:0006811_0.677|GO:0007268_0.676|GO:0007610_0.676|GO:0010817_0.676|GO:0030054_0.676|GO:0034220_0.676|GO:0043167_0.676|GO:0045202_0.676|GO:0071396_0.676|GO:0098916_0.676|GO:0099536_0.676|GO:0099537_0.676|GO:0009410_0.675|GO:0071407_0.675|GO:0032870_0.674|GO:0043434_0.674|GO:1901699_0.674|GO:0001963_0.670|GO:0002118_0.670|GO:0002125_0.670|GO:0003333_0.670|GO:0004888_0.670|GO:0004970_0.670|GO:0004972_0.670|GO:0005215_0.670|GO:0005216_0.670|GO:0005230_0.670|GO:0005244_0.670|GO:0005342_0.670|GO:0006865_0.670|GO:0007215_0.670|GO:0008066_0.670|GO:0008514_0.670|GO:0010469_0.670|GO:0014074_0.670|GO:0015075_0.670|GO:0015171_0.670|GO:0015267_0.670|GO:0015276_0.670|GO:0015318_0.670|GO:0015711_0.670|GO:0015849_0.670|GO:0016595_0.670|GO:0016597_0.670|GO:0022803_0.670|GO:0022824_0.670|GO:0022832_0.670|GO:0022834_0.670|GO:0022835_0.670|GO:0022836_0.670|GO:0022857_0.670|GO:0022890_0.670|GO:0022898_0.670|GO:0030594_0.670|GO:0031406_0.670|GO:0032355_0.670|GO:0032409_0.670|GO:0032412_0.670|GO:0034762_0.670|GO:0035235_0.670|GO:0038023_0.670|GO:0042445_0.670|GO:0043168_0.670|GO:0043177_0.670|GO:0046683_0.670|GO:0046942_0.670|GO:0046943_0.670|GO:0051591_0.670|GO:0051592_0.670|GO:0060089_0.670|GO:0071248_0.670|GO:0071277_0.670|GO:0071320_0.670|GO:0071375_0.670|GO:0071392_0.670|GO:0071466_0.670|GO:0097210_0.670|GO:0097211_0.670|GO:0099601_0.670|GO:1903825_0.670|GO:1905039_0.670|GO:1990806_0.670|GO:2000310_0.670|GO:0017046_0.650|GO:0033218_0.650|GO:0042562_0.650|GO:0051424_0.650|GO:0005634_0.618|GO:0005576_0.617|GO:0005615_0.584
|
IPR029204+126-277_126-278+
|
— |
PF15043+126-277+CB1_cannabinoid_receptor-interacting_protein_1
|
— |
PTHR31952+126-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-129
|
1.000
|
130-280
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
29308.000
|
7.701
|
6.000
|
22.500
|
7.500
|
47.500
|
52.500
|
13.214
|
9.286
|
60.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
576.285
|
1173.717
|
1505.307
|
418.479
|
101.149
|
175.520
|
60.370
|
1165.572
|
124.727
|
702.658
|
454.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.130
|
-1.625
|
-1.738
|
-2.083
|
0.810
|
-1.529
|
2.633
|
-4.130
|
— | — | — | — | — |
No JSON data available for plots.