Hg_chrom5_TN10mRNA_10522
Organism: Heterodera glycines Gene Locus: chr5:8049671-8051063 Feature type: polypeptideProtein Sequence
Length: 377
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 1.419 | 0.916 | 0.823 | 0.619 | 1.156 | 0.379 | 1.857 | 1.238 | 1.075 | 0.804 | 1.56 | 1.621 | 1.071 | 1.732 | 0.758 | 1.218 | 0.723 | 1.632 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9904
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
3-74
|
0.973
|
— | — |
0.000
|
— | — |
0.740
|
0.156
|
0.046
|
0.448
|
0.172
|
0.054
|
0.043
|
0.019
|
0.099
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000070
|
17.000
|
1.000
|
Hsc_gene_9188.t3
|
Hsc_gene_15829.t1
|
— | — |
ADM16639.1 transposase, partial [Meloidogyne javanica]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+110-200+
|
— |
PF10551+110-200+MULE_transposase_domain
|
— |
PTHR47160+101-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20
|
1.000
|
21-377
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
43625.100
|
10.242
|
26.000
|
26.260
|
13.793
|
49.602
|
50.398
|
17.507
|
8.753
|
48.011
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
58.414
|
6.640
|
16.479
|
10.588
|
5.350
|
5.514
|
4.051
|
17.159
|
9.765
|
223.570
|
131.940
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.076
|
— | — |
-1.014
|
— | — |
1.531
|
-1.944
|
— | — |
-4.850
|
— | — |
No JSON data available for plots.