Hg_chrom5_TN10mRNA_10523
Organism: Heterodera glycines Gene Locus: chr5:8053207-8061043 Feature type: polypeptideProtein Sequence
Length: 952
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.111 | 0.611 | 1.528 | 0.254 | 1.506 | 1.401 | 0.863 | 1.418 | 0.654 | 1.278 | 1.082 | 0.927 | 1.138 | 0.667 | 1.415 | 0.885 | 0.861 | 0.7 | 0.646 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9905
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,KRQK,KKKKK,KKKKR,KKRKR,RKGDRKRAALKRKRKSG,ARKGDRKRAALKRKRKS,KKMNGKFIGKKKRKIEKK,KKWKKEEGTNTNDSKGKKP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.882
|
0.112
|
0.020
|
0.153
|
0.022
|
0.023
|
0.052
|
0.004
|
0.017
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004177
|
1.000
|
2.000
|
Hsc_gene_14288.t1;Hsc_gene_14288.t2
|
Hsc_gene_14288.t1;Hsc_gene_14288.t2
|
— |
Q03701.3 CCAAT/enhancer-binding protein zeta [Homo sapiens]
|
KAF7632314.1 CBF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.917|GO:0110165_0.914|GO:0005622_0.845|GO:0016020_0.840|GO:0008150_0.836|GO:0043226_0.801|GO:0009987_0.787|GO:0043229_0.774|GO:0043227_0.744|GO:0043231_0.723|GO:0005634_0.658|GO:0003674_0.520|GO:0043228_0.506|GO:0043232_0.506|GO:0065007_0.503
|
IPR005612+404-684+|IPR016024+220-568+|IPR040155+5-946+
|
— |
PF03914+404-684+CBF/Mak21_family
|
— |
PTHR12048+5-946+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98;502-667;780-952
|
2.000
|
99-501;668-779
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
106455.660
|
5.377
|
-18.500
|
34.349
|
9.349
|
53.887
|
46.113
|
16.912
|
17.437
|
48.109
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1168.297
|
1443.253
|
960.820
|
1348.136
|
1551.936
|
1323.466
|
1758.132
|
658.331
|
748.692
|
1158.254
|
982.727
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.817
|
-0.235
|
0.598
|
0.171
|
-0.215
|
0.421
|
-1.111
|
1.560
|
— | — | — | — | — |
No JSON data available for plots.