Hg_chrom5_TN10mRNA_10524
Organism: Heterodera glycines Gene Locus: chr5:8061147-8069094 Feature type: polypeptideProtein Sequence
Length: 792
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.175 | 0.94 | 1.24 | 0.305 | 1.305 | 1.684 | 0.676 | 1.515 | 0.645 | 1.519 | 0.823 | 0.594 | 1.087 | 0.801 | 1.675 | 0.74 | 0.6 | 0.899 | 1.263 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9906
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,KKKRK,RRAIADNESARQKRVKL,KKWKKEEGTNTNDSKGKKP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.871
|
0.078
|
0.029
|
0.218
|
0.057
|
0.022
|
0.053
|
0.009
|
0.029
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009941
|
1.000
|
1.000
|
Hsc_gene_14287.t1
|
Hsc_gene_14286.t1
|
— |
P53569.2 CCAAT/enhancer-binding protein zeta [Mus musculus]
|
KAF7632314.1 CBF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.910|GO:0110165_0.907|GO:0005622_0.844|GO:0008150_0.843|GO:0016020_0.829|GO:0009987_0.793|GO:0043226_0.787|GO:0043229_0.774|GO:0043227_0.737|GO:0043231_0.722|GO:0005634_0.644|GO:0003674_0.515|GO:0065007_0.512
|
IPR005612+463-685+|IPR016024+279-599+|IPR040155+65-723+
|
— |
PF03914+463-685+CBF/Mak21_family
|
— |
PTHR12048+65-723+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-154;558-662;727-792
|
2.000
|
155-557;663-726
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
89840.190
|
6.792
|
4.000
|
31.313
|
10.354
|
50.758
|
49.242
|
16.667
|
14.646
|
46.465
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
813.189
|
1199.825
|
699.064
|
538.257
|
483.367
|
445.449
|
674.425
|
573.070
|
480.264
|
1467.459
|
1044.376
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.010
|
-1.294
|
-0.268
|
-0.186
|
— |
0.609
|
0.258
|
0.378
|
-1.731
|
— | — | — | — |
No JSON data available for plots.